| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1650 |
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| Symbol | |
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| ID | 5385772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1919149 |
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| End bp | 1921791 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640864631 |
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| Product | hemagglutination repeat-containing protein |
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| Protein accession | YP_001400627 |
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| Protein GI | 153947101 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGTA TCCAAAAGTG TGACTGTAAT TATCTGGCCA GATTTGCAGT TTCAGATTCC
TTTATCAGAG ATAATTCTTT TCGCGGCTTG CTTGCTATTT TTATGGTGAC GATATTTGTG
CCAGGTACTG CATTTTCTGA ACTCTATGTG AACAATGCCA ATGATCCTGG CTGTTATGCC
GTTGTGGATG ATAATAATCT GAATTTTAAG GGGAGGATCA CCGGTATTGT TACTAACCAT
ATATATTGTA ATACGTTGAC TGAGGCGAAT CTGAATACCA ATGGGGGGCA GCTATTTGTT
GGCGGACAAG GCGGGCTCCC AGGGTACGCT CCCACCCCCT GGACAGGGAC ATTCACGACG
GCCGTTGGCA CCAGTAATGT CGCCACAGCA TACGGCTTTG TCGTTCAAAA AAATGGTGCA
TTTATCAACG GTGATACCTA CGTGCAGGGG GGGTTATTTT TGAATGGTAG GAAAGCCACC
AATCTTGCCC CCGCAACGAT TTCATCGACC TCCACCGATG CGGTGGTTGG TAGCCAGCTT
TATACGGTGA TCCAAGATGG AACCCGCTAT TTCCACGCCA ACTCAGCGAA CCCGCAAGAC
TCCGTGCCTA CGGGTCAGGA TGCTATTGCT GTCGGGCCGG CGACGGTGGT CAATGGTAAT
AACGGGATTG GTATTGGTAA TAGCGCCGTT GTTGGGCCGA GTGCTGTCGG GGGCATTGCA
ATTGGCCCCA ACACTCAGGC GACCGGTACC GCCAGCACGG CCCTTGGTGC CGGAACGCAG
GCGCAGGGGG CACAGTCTTT GGCTCTTGGG GCCGGGGCGG TTACCCGCCA GGTAAACAGT
ATTGCGTTAG GGGCGTCGTC GGTCACCACG GTGGGCGCTC AGGGCAGCTA CAGTGCATAC
GGACTGCCGA CCACGCAGGC GTCGGTGGGG GAAGTGGGCA TAGGGACCGC GCAGGGTAAT
CGCAAGATCA CCGGTGTGGC AGCGGGCTCG GCTGGTTATG ATGCGGTCAA CGTGACTCAG
TTGACTGCTG TTGGTAATAA AGTCGACCAA AATACCGCTG ACATTACCAG TTTAGACGGC
CGGGTCACCA ATGTTGAGGG GGGGATGACC AGCATCACCA ACGGGGGCGG TATAAAGTAC
TTCCACACTC ACTCCACCGA GCCTGATTCG GTGGCCAGCG GCAGTGATTC GGTGGCGATC
GGACCGAATG CGCAGGCGTC CGGTACCACG TCGATAGCCA TGGGGGCCGG GTCGACAGCG
CAGGGAGCAC AGTCTCTGGC ATTGGGGGCG GGAGCGGCTG CCAGCCAGGC AAACAGTATT
GCGTTAGGGG CGTCATCGGT CACCACGGTC GGTGCTGAGA GCAACTACAG TGCGTACGGA
CTGACAGCTT CCCAAACGTC GGTGGGCGAG GTGGGGGTGG GCACGGCACA GGGGAATCGC
AAGATCACCG GTGTGGCAGC CGGTTCGGCT GATTATGATG CGGTCAATGT CGCGCAATTG
ACCGCTGTTG GTGACAAGGT CGATCAGAAT ACCGCTGACA TCACCAGTTT AGACGGCCGG
GTCACCAATG TTGAGGGGGA GATGACCAGC ATCACCAACG GGGGCGGCGT GAAATACTTC
CACACCCACT CCACCGAGCC TGATTCGGTG GCCAGCGGCA GTGATTCGGT GGCGATCGGA
CCGAATGCGC AGGCGTCAGG TACGGCTTCG GTGGCCTCCG GCAAGGATAC GCTGGCCTCC
GGTAACGGTG CGGTGGCGAT AGGTGATGCA GCAAGCGTCA GCGCAGAGGG CAGTGTTGCC
CTGGGGCAGG GTTCCGCTGA CAACGGGCGC GGTGCAGAGA GCTACACCGG CAAGTACTCC
ACTGCGGATA ACACCACCTC AGGTACGGTG TCGGTGGGCA ATGCGGCAAC CGGAGAGACC
CGGACGGTCA GCAACGTTGC CGACGGGCGA GAGGCCATGG ATGCAGTCAA TCTGCGGCAA
CTCGATGGTG CAATGGCGGC GGTGGGTGAC ACCGTATCAG GGTTGCAGAA CGGCACTGAC
GGGATGTTCC AGGTGAACAA CAACAGCGGT CAGGCCAAGC CTTCGGCCAC CGGAACTGAT
GCGATGGCGG GGGGGGCAGG TTCCGTGGCG TCTGGCAGCC ACAGTACCGC GATGGGTACG
GGCAGCAAGG CGACGGCGGC AAACAGCACC GCGCTGGGGG CCAACTCAGT GGCGGATCGT
GAAAACAGTG TCTCGGTGGG GTCAGTGGGT AATGAACGGC AGCTCACTAA TGTTGCTGCG
GGGACTCAGG GCACTGATGC GGTGAATCTG GATCAACTCA ACCATAGCAT GTCGAATGTC
ACCAACGACG CCAATGCTTA TACAGACCAG CGCTATTCTG CACTTAAAGA AGATCTGAAA
AAACAGGATA GTACGTTAAG TGCGGGGATC GCCGGTGCCA TGGCGATGGC GAGCCTGACT
CAACCCTATA CGCCGGGTGC CAGCATGGCG ACCATTGGTG CGGCCAGCTA TCGGGGCCAG
TCGGCGCTGT CGGTGGGGGT GTCGAGTATT TCTGACAGTG GGCGATGGGT CAGCAAATTG
CAGGCCTCCT CTAATACACA AGGCGATATG GGGGTTGGTG TCGGCGTCGG TTATCAATGG
TAA
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| Protein sequence | MKSIQKCDCN YLARFAVSDS FIRDNSFRGL LAIFMVTIFV PGTAFSELYV NNANDPGCYA
VVDDNNLNFK GRITGIVTNH IYCNTLTEAN LNTNGGQLFV GGQGGLPGYA PTPWTGTFTT
AVGTSNVATA YGFVVQKNGA FINGDTYVQG GLFLNGRKAT NLAPATISST STDAVVGSQL
YTVIQDGTRY FHANSANPQD SVPTGQDAIA VGPATVVNGN NGIGIGNSAV VGPSAVGGIA
IGPNTQATGT ASTALGAGTQ AQGAQSLALG AGAVTRQVNS IALGASSVTT VGAQGSYSAY
GLPTTQASVG EVGIGTAQGN RKITGVAAGS AGYDAVNVTQ LTAVGNKVDQ NTADITSLDG
RVTNVEGGMT SITNGGGIKY FHTHSTEPDS VASGSDSVAI GPNAQASGTT SIAMGAGSTA
QGAQSLALGA GAAASQANSI ALGASSVTTV GAESNYSAYG LTASQTSVGE VGVGTAQGNR
KITGVAAGSA DYDAVNVAQL TAVGDKVDQN TADITSLDGR VTNVEGEMTS ITNGGGVKYF
HTHSTEPDSV ASGSDSVAIG PNAQASGTAS VASGKDTLAS GNGAVAIGDA ASVSAEGSVA
LGQGSADNGR GAESYTGKYS TADNTTSGTV SVGNAATGET RTVSNVADGR EAMDAVNLRQ
LDGAMAAVGD TVSGLQNGTD GMFQVNNNSG QAKPSATGTD AMAGGAGSVA SGSHSTAMGT
GSKATAANST ALGANSVADR ENSVSVGSVG NERQLTNVAA GTQGTDAVNL DQLNHSMSNV
TNDANAYTDQ RYSALKEDLK KQDSTLSAGI AGAMAMASLT QPYTPGASMA TIGAASYRGQ
SALSVGVSSI SDSGRWVSKL QASSNTQGDM GVGVGVGYQW
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