| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1618 |
|---|
| Symbol | |
|---|
| ID | 5388362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1877003 |
|---|
| End bp | 1878583 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640864599 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_001400595 |
|---|
| Protein GI | 153949821 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTTA ACAAACCTGT CAGCCGGCAG GAGTATCCCA TTGAGCGCGA TATCACCTTG
CAGTCCACCA CTGATATTCA TGGAAATATT GCTTACGCTA ATGCTGCTTT TGTTCGTGCC
AGTGGCTTTG AATATCAAGA GTTGCAAGGT CAACCTCACA ATATGGTAAG GCACCCCGAT
ATGCCACCCG CGGCTTTTGC TGATATGTGG CAAACATTGA ATGCCGGTCT TTCTTGGTCT
TCATTGGTGA AGAATCGCCG TAAAAATGGA GATTATTACT GGGTCCGGGC TAATGCGACG
CCACTGCGCC ATAATGGCCG TTTAACCGGT TATATTTCGG TACGTATTGC GCCAACTCGC
GATGAGGTAA AACAAGCTGA AGCATTGTAT ACCGATTTCA ACACCGGTAA GGCAAAACGG
CGGCATATTG CCTTGTATCG TGGGCTGATC GTGCGCACGG GGTGGCTCTC CCCACTTTCT
TTGTTCCAAA CTTTACCATT ACGCTGGCGC CTGCGGAGTG CCTTGCTGAG TTCCGCCATC
ATTCCAACCG CCGCCGCCAG TGTGATGGAG GTAGCGGGTC AACCTCTCTT GATTCTCGGC
TCGGTGGCAT TGACCTGGAG CGTATTGGCT TCACTGTGGT TGGAGCGGCA GATTGCCCGC
CCCATCGCGG CTATTTTGCA ACAGGCGCAG GACGTTTCCT CTGGAGAAGC AGGCGATTAT
GTACAACTAA ATCGTGTCGA TGAAATCGGT TATTTAATGC GTAGCGTCAA TCAACTCGGC
CTGAACCTAC GTTCTTTAAC CGATGATGTC AGTGGTCAGG TTGATGGGAT TAATACCGCC
AGCAACGAAA TTGCTGCTGG CAATCGCGAA CTAAAAGTAC GAACCGAACA AGCAACCGAT
AATCTGCAAC ACATTGTCAG TGCCACAGAA CAATTAGCTG CGACAGTGCA GAACAGCGCT
AACAGTGCCA ATGAAACAAC ATCACTCGCC GAAATGAGCA GCTATGCCGC AGAAAAAGGC
AGCGAGCTCA TGCACCAAGT CATTGAAACT ATGGGCACTA TCAATGACTC CAGCCATCGC
ATTGTAGATA TTATCAGTGT GATTGAAGGC ATTGCTTTTC AGACCAATAT TCTGGCACTC
AACGCGGCCG TAGAAGCGGC CCGGGCGGGT GAACAAGGTC GTGGATTTGC CGTAGTTGCC
AGCGAGGTAC GCCATTTGGC ACAACGTTCG TCAACCGCAG CAAAAGAGAT TAAACATTTA
ATTGAGACCA GTGTAGAGCG GGTACGTGAC GGAAGTACTT TGGTGCAAAG TGCCGGTGCC
ACTATGGACA ATATTGTCAA ACAGGCAAGC CAGGTCTCTA CGTTGATCAG TGAAATCAGC
ACCTCGACTC ATGAACAGAC ACAGGCCCTT GGCCAAATCC GGCAATCGAT CAGTCGGCTA
GATCAAATGA CTTACCAGAA TGCCGCGATG GTTGAGCAAT ATGCTGGCGC GGCAGAAGAA
CTGGCACATC GGACATTGCG ACTAACCGCA GCGGTCCGTA TTTACCGCCC ATTGAATAAC
GTAGGAAAGT TAAGGGATTA G
|
|---|
| Protein sequence | MRVNKPVSRQ EYPIERDITL QSTTDIHGNI AYANAAFVRA SGFEYQELQG QPHNMVRHPD
MPPAAFADMW QTLNAGLSWS SLVKNRRKNG DYYWVRANAT PLRHNGRLTG YISVRIAPTR
DEVKQAEALY TDFNTGKAKR RHIALYRGLI VRTGWLSPLS LFQTLPLRWR LRSALLSSAI
IPTAAASVME VAGQPLLILG SVALTWSVLA SLWLERQIAR PIAAILQQAQ DVSSGEAGDY
VQLNRVDEIG YLMRSVNQLG LNLRSLTDDV SGQVDGINTA SNEIAAGNRE LKVRTEQATD
NLQHIVSATE QLAATVQNSA NSANETTSLA EMSSYAAEKG SELMHQVIET MGTINDSSHR
IVDIISVIEG IAFQTNILAL NAAVEAARAG EQGRGFAVVA SEVRHLAQRS STAAKEIKHL
IETSVERVRD GSTLVQSAGA TMDNIVKQAS QVSTLISEIS TSTHEQTQAL GQIRQSISRL
DQMTYQNAAM VEQYAGAAEE LAHRTLRLTA AVRIYRPLNN VGKLRD
|
|---|
| |