Gene YpsIP31758_1612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1612 
SymbolmnmA 
ID5387631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp1871423 
End bp1872538 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content50% 
IMG OID640864593 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_001400589 
Protein GI153950153 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGATA ATAGCCAGAA AAAAGTCATC GTCGGCATGT CCGGCGGTGT CGACTCTTCC 
GTTTCCGCTT ACCTGCTCCA GCAACAGGGC TATCAAGTTG CTGGCCTGTT CATGAAGAAT 
TGGGAAGAGG ATGATGACGA GGAATATTGC TCTGCAGCGA CCGATCTGGC CGATGCGCAA 
GCAGTATGTG ACAAACTGGG TATGGAGTTG CACACCGTTA ATTTTGCAGC AGAATACTGG 
GATAACGTTT TCGAATTGTT CCTGGCAGAA TATAAAGCCG GGCGGACACC TAATCCCGAT 
ATTCTGTGTA ATAAAGAGAT AAAATTTAAA GCGTTTCTTG AATTTGCAGC TGAAGATTTG 
GGCGCAGATT ATATCGCCAC AGGTCATTAC GTCCGTCGCC AGGATGTTGA TGGTAAAAGC 
CGCCTACTGC GCGGCCTTGA TGGAAATAAA GACCAAAGCT ACTTCCTGTA TACATTAAGT 
CACGAACAGA TTGCTCAAAG TTTGTTCCCT GTCGGTGAGT TAGAAAAACC TGAAGTGCGT 
CGCATAGCAG AACAGCTCGA TTTAGTCACC GCAAAGAAAA AAGACTCTAC GGGCATCTGC 
TTTATCGGGG AGCGCAAATT CCGTGATTTC CTTGGCCGCT ACCTGCCTGC ACAGCCAGGT 
CCGATCATGA CGGTTGACGG CCAACTGGTG GGCAAACACC AAGGGTTGAT GTATCACACC 
CTCGGGCAAC GCAAAGGTTT AGGTATCGGG GGTACCAAAG AGGGGGGTGA TGACCCGTGG 
TACGTCGTGG ATAAAGACCT GGACAGCAAC ACGTTACTGG TTGCTCAGGG GCACGAACAC 
CCTCGGTTAA TGTCTGTTGG CCTGGTTGCT CAACAGCTAC ATTGGGTCGA TCGCCAACCC 
GTGACCGCCC CTTTCCGCTG TGTCGTAAAA ACACGTTATC GTCAGCAAGA TATTCCCTGT 
ACCGTAACAC CACTTGATGA CGAACGGGTT GACGTTCGGT TTGATGACCC GGTTGCTGCC 
GTCACGCCTG GCCAGTCTGC CGTCTTTTAC CAAGGTGAAA TCTGCCTGGG GGGCGGTATT 
ATTGAACAGC GTTACCCACT GACTATTCCG GCATAA
 
Protein sequence
MSDNSQKKVI VGMSGGVDSS VSAYLLQQQG YQVAGLFMKN WEEDDDEEYC SAATDLADAQ 
AVCDKLGMEL HTVNFAAEYW DNVFELFLAE YKAGRTPNPD ILCNKEIKFK AFLEFAAEDL 
GADYIATGHY VRRQDVDGKS RLLRGLDGNK DQSYFLYTLS HEQIAQSLFP VGELEKPEVR 
RIAEQLDLVT AKKKDSTGIC FIGERKFRDF LGRYLPAQPG PIMTVDGQLV GKHQGLMYHT 
LGQRKGLGIG GTKEGGDDPW YVVDKDLDSN TLLVAQGHEH PRLMSVGLVA QQLHWVDRQP 
VTAPFRCVVK TRYRQQDIPC TVTPLDDERV DVRFDDPVAA VTPGQSAVFY QGEICLGGGI 
IEQRYPLTIP A