| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1601 |
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| Symbol | lolD |
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| ID | 5386140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1859392 |
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| End bp | 1860096 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640864582 |
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| Product | lipoprotein transporter ATP-binding subunit |
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| Protein accession | YP_001400578 |
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| Protein GI | 153949323 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.000492682 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAATC ATCCTTTATT ACAATGTATA AACCTGTGCA AGCGTTATCA GGAAGGCCAA
CTGCATACTG ATGTCCTGCG CAATGTCTCT TTCGCTATCG AGCCTGGTGA ACTGATGGCG
ATTGTCGGCA GTTCAGGTTC AGGTAAAAGC ACGCTGTTGC ATTTGCTGGG GGGGCTGGAT
TCACCTACCT CTGGTGAGGT TATTTATCAG GGGCGTTCGC TTAACCAACT CTCTTCTACC
GCGAAAGCTG AATTGCGTAA TCGAGAGTTA GGTTTTATCT ATCAATTTCA TCATTTGTTG
CCCGATTTTA CCGCGTTAGA AAATGTCGCC ATGCCATTAC TCATCGGCGG CAGTAAACCC
GCTGAAGCGC AAGAGAAAGC CCATGAGATG CTGGCGGCGG TGGGGTTGGA GAAGCGCAGT
AAACATCGTC CATCGGAGTT ATCAGGGGGA GAGCGCCAAC GGGTCGCTAT CGCCCGTTCT
TTGGTAAATA ACCCATCGCT GGTATTGGCA GATGAACCTA CCGGTAATCT GGACCAACGC
AATGCCGACA GTATTTTTAA TCTGTTAGGT GAATTGAATG TTCGTCAGGG GACCGCGTTT
CTGGTGGTGA CTCACGATTT ACAATTAGCG AAACGGATGA GCCGTCAACT TGAAATGCGA
GATGGTCAGC TACAACACCA TTTGACGCTG GTGGGGGCCG AGTGA
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| Protein sequence | MSNHPLLQCI NLCKRYQEGQ LHTDVLRNVS FAIEPGELMA IVGSSGSGKS TLLHLLGGLD
SPTSGEVIYQ GRSLNQLSST AKAELRNREL GFIYQFHHLL PDFTALENVA MPLLIGGSKP
AEAQEKAHEM LAAVGLEKRS KHRPSELSGG ERQRVAIARS LVNNPSLVLA DEPTGNLDQR
NADSIFNLLG ELNVRQGTAF LVVTHDLQLA KRMSRQLEMR DGQLQHHLTL VGAE
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