| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1600 |
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| Symbol | lolC |
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| ID | 5387943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1858197 |
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| End bp | 1859399 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640864581 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolC |
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| Protein accession | YP_001400577 |
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| Protein GI | 153950693 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00000642321 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCAAC CTGTCGCCCT ATTTATCGGC CTGCGTTATA TGCGTGGGCG TGCTTCTGAC
CGCTTCGGTC GGTTTGTTTC GTGGCTTTCT ACCATTGGCA TTACGCTGGG GGTGATGGCT
CTTATCACGG TATTGTCTGT GATGAATGGT TTTGAGCGTA ATCTGCAAGA TACGATTTTG
GGGCTTATGC CACAGGCGCT GATTACCACA CCACAAGGTT CTTTGGATCC AAACAAGATA
CCGGCTTCAA CCCTAAAATC GCTGAGCGGT GTCAGTGATA TTGTGCCGTT GACCACGGCG
GATGTGGTGT TACAAAGTGC GCGTAATTTG GCCGCCGGTG TGATGCTGGG GGTTGATCCA
CAGCAGCATG AACCATTGGC CAATTATTTG GTTAACGTGG ATATAAAAGC GTTAGCGCCA
GGTAGCTACA ACATCATCCT CGGCGAGAAG TTAGCGGGCC AGCTCGGGGT TAAACGCGGT
GAAACACTGC GTTTGATGGT ACCGAGCGCC AGCCAATTCA CGCCAATGGG CCGTATTCCC
AGCCAGCGTG TGTTTAATAT TATCGGCACC TTTGCAGCGA ATAGCGAAGT TGATGGCTAT
CAAATTTTGG TTAACCAGCA GGATGCATCA CGCCTGATGC GTTACCCTCT TGGGAATATT
ACCGGCTGGC GCTTATTCCT CTCGCAGCCG CTGTCGGTCG ATAGCCTGAG CCAGCAGAGT
TTGCCAGAAG GCACCGTATG GAAAGACTGG CGTGACCGTA AAGGTGAGCT TTTCCAGGCC
GTGCGGATGG AAAAGAACAT GATGGGGTTA TTGCTCAGTC TGATTATTGC TGTCGCAGCC
TTTAATATCA TTACGTCACT GGGGCTGTTA GTGATGGAAA AACAAGGCGA GGTGGCGATT
TTGCAAACCC AAGGGTTGAG TCGCCGGCAA ATTATGTTGG TGTTTATGGT GCAAGGTGCC
ACCGCTGGGG TTATCGGCGC ATTGCTAGGG GTAGGGCTGG GGGTTTTACT CGCCAGCCAA
TTGAACACCC TGATCCCTAT TTTGGGCGTA TTGATTGATG GCGCAACGCT ACCCGTGGAG
ATTGACCCAC TTCAGGTTAC GGTCATTGCA CTGCTAGCCA TGGTGATCGC TCTATTGTCC
ACGCTGTACC CTTCCTGGCG CGCCGCCGCC GCACAACCCG CAGAGGCTTT ACGCTATGAG
TAA
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| Protein sequence | MYQPVALFIG LRYMRGRASD RFGRFVSWLS TIGITLGVMA LITVLSVMNG FERNLQDTIL
GLMPQALITT PQGSLDPNKI PASTLKSLSG VSDIVPLTTA DVVLQSARNL AAGVMLGVDP
QQHEPLANYL VNVDIKALAP GSYNIILGEK LAGQLGVKRG ETLRLMVPSA SQFTPMGRIP
SQRVFNIIGT FAANSEVDGY QILVNQQDAS RLMRYPLGNI TGWRLFLSQP LSVDSLSQQS
LPEGTVWKDW RDRKGELFQA VRMEKNMMGL LLSLIIAVAA FNIITSLGLL VMEKQGEVAI
LQTQGLSRRQ IMLVFMVQGA TAGVIGALLG VGLGVLLASQ LNTLIPILGV LIDGATLPVE
IDPLQVTVIA LLAMVIALLS TLYPSWRAAA AQPAEALRYE
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