| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1587 |
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| Symbol | |
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| ID | 5385699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1845059 |
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| End bp | 1845877 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640864568 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001400564 |
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| Protein GI | 153948931 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.00243762 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGGT ACTTAAATAA AGATACGACA GTGTGTATTT CCCTTGCGGC CAGACCCAGC
AATTTTGGTA CCCGTTTTCA TAACTTTTTA TATGATGCTT TAGATCTCGA TTATTTGTAT
AAAGCTTTTA CCACTAACGA CTTGGCTGCG GCTATTGGTG GTGTGCGAGC GTTGGGTTTC
CGTGGCTGCG CGATCTCAAT GCCGTTTAAA GAGGCCGTTA TTCCAATGGT AGATGAGATG
GACCCCTCGG CCAAAGCGAT CAACTCAGTG AATACACTGG TTAATACTGG CGGTTATCTG
AAAGCATACA ATACCGACTA TATTGCCATT GCCAAATTGT TACAGGAGTA TCAGGTCCCG
GTAGATAACG TGTTTGCCTT GCGGGGCAGT GGCGGTATGG CGAAAGCCGT TGCTTTTGCG
CTGAAAAATG CTGGCTTCAA ACAGGGTTAT ATTATCGCCA CCAATGAAAA GACCGGCAAG
CAACTTGCAG AGCAATCTGG TTACATCTAT CGCCCTGATA TGCAGAATAT TCAGGCTGAT
ATGCTCATTA ATGCGACGCC AGTCGGCATG GCTGGGGGGG CTGATGCTGA TAAACTGGCC
TTTACTGAAA CTGAAGTGGA TCGCGCGAAA ATTGTTTTTG ATGTTGTGGC GTTGCCCGCC
GTCACCCCGC TTATCCGCTA TGCTCAGACT CAGGGAAAAA CAGTGATCAC CGGTGCCGAG
GTTTTTGCTA TTCAGGCTGT AGAGCAATTT GTGTTATACA CCGGTATCCG CCCAAGTCAG
GCGCTGTTTG AACAAGCCGC AGCTTATGCA AGAGGCTGA
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| Protein sequence | MTRYLNKDTT VCISLAARPS NFGTRFHNFL YDALDLDYLY KAFTTNDLAA AIGGVRALGF
RGCAISMPFK EAVIPMVDEM DPSAKAINSV NTLVNTGGYL KAYNTDYIAI AKLLQEYQVP
VDNVFALRGS GGMAKAVAFA LKNAGFKQGY IIATNEKTGK QLAEQSGYIY RPDMQNIQAD
MLINATPVGM AGGADADKLA FTETEVDRAK IVFDVVALPA VTPLIRYAQT QGKTVITGAE
VFAIQAVEQF VLYTGIRPSQ ALFEQAAAYA RG
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