Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1569 |
Symbol | rne |
ID | 5385913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1825938 |
End bp | 1829588 |
Gene Length | 3651 bp |
Protein Length | 1216 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640864550 |
Product | ribonuclease E |
Protein accession | YP_001400546 |
Protein GI | 153949428 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000219809 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTGATTAA CGCGACTCAG CAAGAAGAGT TGCGTGTTGC CCTTGTAGAT GGACAGCGGC TGTATGATCT GGATATTGAA AGCCCAGGCC ATGAACAGAA AAAAGCGAAT ATTTATAAAG GTAAAATCAC CCGAATCGAA CCTAGTCTGG AAGCCGCTTT TGTTGATTAT GGCGCGGAAC GACATGGTTT CCTTCCATTA AAAGAAATCT CTCGCGAGTA CTTCCCCAAT AATTACTCTT CCCATGGCCG CCCAAACATC AAAGATGTCT TGCGTGAAGG CCAGGAAGTT ATTGTTCAGG TTGATAAAGA AGAACGCGGC AATAAAGGTG CTGCATTAAC CACTTTCATT AGTCTGGCTG GCAGCTATTT GGTTCTGATG CCAAACAACC CACGTGCGGG CGGTATTTCT CGCCGCATCG AAGGTGATGA CCGCACCGAG CTGAAAGAAG CCCTATCTTC CCTGCAATTA CCTGATGGCA TGGGTCTGAT TGTTCGTACT GCGGGTGTGG GCAAATCTGC TGACGCACTG CAATGGGATT TGTCATTCCG CCTGAAGCAC TGGGATGCGA TTAAAAAAGC GGCTGAAGGT CGCCCCGCGC CCTTCTTAAT CCATCAGGAA AGTAACGTGA TCGTCCGTGC TTTTCGCGAT TACCTGCGCC CAGACATCGG CGAAATCCTG ATTGATAATC CGAAGGTTCT CGAACTGGCA AAAGAGCATA TTGCTGCCCT TGGTCGCCCG GATTTCAGCA GCAAAATAAA ATTGTATAGC GGTGAAATTC CGTTATTCAG TCATTACCAA ATTGAGTCGC AGATCGAATC TGCCTTCCAA CGTGAAGTGC GTTTGCCGTC TGGTGGCTCT ATCGTTATTG ACACGACCGA AGCACTGACG GCGATTGATA TCAACTCAGC CCGAGCCACG CGTGGTGGTG ATATCGAAGA GACCGCGTTT AATACCAACC TTGAAGCCGC TGACGAAATT GCTCGCCAAT TACGTTTACG TGACCTTGGT GGTCTGATCG TTATCGACTT CATTGATATG ACCCCGGTAC GCCATCAACG TGAAGTTGAA AACCGTTTAC GCGATGCTGT CCGTCAGGAC CGTGCCCGTA TCCAGATTGG TCGTATCTCA CGCTTTGGTT TGCTGGAAAT GTCCCGTCAG CGCCTCAGCC CATCGCTGGG TGAATCCAGT CACCACGTCT GCCCACGCTG TAGCGGTACC GGCACCGTAC GTGACAATGA ATCGCTGTCA CTTTCTATTC TGCGTTTGAT TGAAGAAGAA GCGCTGAAAG AGAATACCCA TGAAGTTCAC GCCATCGTAC CGGTACAAAT CGCATCGTAC CTGTTGAACG AAAAACGTGA ATCAGTAAAC GCTATTGAGA AGCGTCAAGG TGGTGTCCGT GCCGTGATCG TGCCAAACGA TCAGATGCAA ACACCGCACT ACTCTGTCCT GCGCGTACGC AAAGGCGAAG AAGTCCCGTC TCTCAGCTAT CTGTTGCCAC AACTGCACGA AGCAGAAATG GCGCAACCGC TGGAAGAGGC CACCATTGAA CGTAAGCGCC CGGAACAACC AGCATTGGCT ACCTTCTCTC TGCCAACAGA AGTGCCACCA GAGGAGGCCC CTACCGTAGC CAAGGCTAAA CCTGCGGTTG CAACACCCGC CGCGGTTAGT ACTGACGTAG AACAACCTGG CTTCTTTAGC CGTTTGTTCA GTGGCTTAAA AAATATGTTT GGTGCTTCCG CTGAAGCAGA AGTGCAACCC GCTGAAGTTG TAAAAACCGA CGCTAGCGAA AATCGCCGTA ATGATCGCCG CAATCCTCGC CGCCAGAATA ATGGCCGTAA AGAGCGCAAT GATCGTACTC CACGCGAAGG TCGTGATAAT TCCAGCCGCG ATAACACCAA CCGTGATAAC ACCAGTCGTG ATAACGCTAA CCGCGATGGC GCTAATCGTG ATAATTCCAA TCGCGACAAC AGTGGCCGCG ATAACGTTAG TCGTGAAGGC CGCGAAGATC AACGCCGCAA CAACAGACGT CCGGCCCAGC CAACGACAAC ATCGCAAGGG CAAACTGAGG TTGTTGAAGC CGATAAAGCG CAACGTGAAG AACAACCACA GCGCCGTGGT GACCGTCAGC GTCGTCGTCA GGATGAGAAG CGTCAGGCAC CACAAGAAAT CAAAGCAGAT GTTGCGGAAG CCCCTGTTAT AGAAGAGGTA CAACCTGAGC AAGAAGAACG CCAACAGGTT ATGCAACGTC GTCAGCGTCG CCAGTTGAAT CAGAAAGTCC GTATTCAATC GGCAAATGAT GAACTGAATA CGTTGGAATC TCCTGTCAGT GCACCTGTTG CGCAGGTGGT GGTGGCTGAA GTACAAGAAG AAGTGAAGTT ACTGCCACAA ATTACTGCTC AAACTGATGA TGACAGTGCT AATGAACGTA CTACCAATAA TGAAAATGGT ATGCCACGTC GTTCCCGTCG TTCACCACGC CATCTGCGTG TTAGTGGTCA ACGCCGTCGC CGTTATCGTG ATGAACGTTA CCCGGCACAA TCGGCCATGC CTCTGGCAGG GGCTTTTGCC TCACCAGAAA TGGCATCCGG TAAAGTGTGG GTTCGTTATC CAGTGACGCC AGTCGTTGAA CAGGTTGTCG TTGAACAGGT TGTCGTTGAA CAAATCGCCA TTGAACAAAC TACAACCGTT GAGCAAACAG CCATCGTCGA GCAGGTCAGT GTAGCGAATA TTGTCACTGC GCAATTGCCT GTAGAGCAGG TACAAAACAC CGTTGCAGAA CAAGAATCGA GTGCAACTCC ATCTGTTATG ACAACACCAA CCGTTGCGGT AACACTGGCC CCACAACACA AACCGGGGGG TTCTTCATCT TCGGCTGCTG CGGTTCCAGG CCGTGCACCT ATCGTTGCTG CAGTGCCTGT CGTTGCTGAA ACGACTGCTG CTGAAACGGT TGTTGCTAAA ACTGAAGCCG CTATTGATGC GGTGGCTGTT GTGGAACCGA TGGCTGCTGT GGAATCGATA GCTGCTGTGG AAACTGCAAC TGTAGAACCG GTTGTTACAG AAGAACCGAA TGTCACAGAA CCGGCCGTTG CCGAGCCAGC GATTGAAACT GATCCTGTCG AAGAAACAAC ATCAGTTGTA GAGATTGCTC CAACCGTTGA ATCAACGCCT ATGATCGAAG ATACGGCTGT TGTAGTCGCT GCGACGGTGG TTGACACTAC ACCAGAAACT GCGTCAACCG TGCAAGATGA TATTGTTGAA GAGACAGCAG TTGAAGCGGT AAATATCTCT GAAACTGTGG CTGAAGAGAC CGCAATAACG GAACCTGCTG CTGAAGCCAT TGCTACTCAG CAAACCACTA TTGCGCAGGA GACCATTGCT GAACCAACGG TTGAAACCGC TATTGATGTG GTTGCGGTAG TCAAACAACC CGCGGTTGCG CATCCGGAAG GGGTGGTGTT CAAACACTTC GCTTCAGCGC CAATGACCAA AGCGCCAGCA CCTGATTACG CCCCTGAATC ACCGACCAAA GGTCACTGGG AGCGTCCAAC CTTTGATTTC TCAGGCAAAG GTTCTGCTGG GGGTCATGCC GCGGCTACCC AGGCAACTGC ACCCGCGACC AAACCGCAAT CTGTTGAGTA A
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEISREYFPN NYSSHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALSSLQL PDGMGLIVRT AGVGKSADAL QWDLSFRLKH WDAIKKAAEG RPAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKVLELA KEHIAALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE NRLRDAVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTHEVH AIVPVQIASY LLNEKRESVN AIEKRQGGVR AVIVPNDQMQ TPHYSVLRVR KGEEVPSLSY LLPQLHEAEM AQPLEEATIE RKRPEQPALA TFSLPTEVPP EEAPTVAKAK PAVATPAAVS TDVEQPGFFS RLFSGLKNMF GASAEAEVQP AEVVKTDASE NRRNDRRNPR RQNNGRKERN DRTPREGRDN SSRDNTNRDN TSRDNANRDG ANRDNSNRDN SGRDNVSREG REDQRRNNRR PAQPTTTSQG QTEVVEADKA QREEQPQRRG DRQRRRQDEK RQAPQEIKAD VAEAPVIEEV QPEQEERQQV MQRRQRRQLN QKVRIQSAND ELNTLESPVS APVAQVVVAE VQEEVKLLPQ ITAQTDDDSA NERTTNNENG MPRRSRRSPR HLRVSGQRRR RYRDERYPAQ SAMPLAGAFA SPEMASGKVW VRYPVTPVVE QVVVEQVVVE QIAIEQTTTV EQTAIVEQVS VANIVTAQLP VEQVQNTVAE QESSATPSVM TTPTVAVTLA PQHKPGGSSS SAAAVPGRAP IVAAVPVVAE TTAAETVVAK TEAAIDAVAV VEPMAAVESI AAVETATVEP VVTEEPNVTE PAVAEPAIET DPVEETTSVV EIAPTVESTP MIEDTAVVVA ATVVDTTPET ASTVQDDIVE ETAVEAVNIS ETVAEETAIT EPAAEAIATQ QTTIAQETIA EPTVETAIDV VAVVKQPAVA HPEGVVFKHF ASAPMTKAPA PDYAPESPTK GHWERPTFDF SGKGSAGGHA AATQATAPAT KPQSVE
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