Gene YpsIP31758_1569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1569 
Symbolrne 
ID5385913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp1825938 
End bp1829588 
Gene Length3651 bp 
Protein Length1216 aa 
Translation table11 
GC content51% 
IMG OID640864550 
Productribonuclease E 
Protein accessionYP_001400546 
Protein GI153949428 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000219809 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGAA TGTTGATTAA CGCGACTCAG CAAGAAGAGT TGCGTGTTGC CCTTGTAGAT 
GGACAGCGGC TGTATGATCT GGATATTGAA AGCCCAGGCC ATGAACAGAA AAAAGCGAAT
ATTTATAAAG GTAAAATCAC CCGAATCGAA CCTAGTCTGG AAGCCGCTTT TGTTGATTAT
GGCGCGGAAC GACATGGTTT CCTTCCATTA AAAGAAATCT CTCGCGAGTA CTTCCCCAAT
AATTACTCTT CCCATGGCCG CCCAAACATC AAAGATGTCT TGCGTGAAGG CCAGGAAGTT
ATTGTTCAGG TTGATAAAGA AGAACGCGGC AATAAAGGTG CTGCATTAAC CACTTTCATT
AGTCTGGCTG GCAGCTATTT GGTTCTGATG CCAAACAACC CACGTGCGGG CGGTATTTCT
CGCCGCATCG AAGGTGATGA CCGCACCGAG CTGAAAGAAG CCCTATCTTC CCTGCAATTA
CCTGATGGCA TGGGTCTGAT TGTTCGTACT GCGGGTGTGG GCAAATCTGC TGACGCACTG
CAATGGGATT TGTCATTCCG CCTGAAGCAC TGGGATGCGA TTAAAAAAGC GGCTGAAGGT
CGCCCCGCGC CCTTCTTAAT CCATCAGGAA AGTAACGTGA TCGTCCGTGC TTTTCGCGAT
TACCTGCGCC CAGACATCGG CGAAATCCTG ATTGATAATC CGAAGGTTCT CGAACTGGCA
AAAGAGCATA TTGCTGCCCT TGGTCGCCCG GATTTCAGCA GCAAAATAAA ATTGTATAGC
GGTGAAATTC CGTTATTCAG TCATTACCAA ATTGAGTCGC AGATCGAATC TGCCTTCCAA
CGTGAAGTGC GTTTGCCGTC TGGTGGCTCT ATCGTTATTG ACACGACCGA AGCACTGACG
GCGATTGATA TCAACTCAGC CCGAGCCACG CGTGGTGGTG ATATCGAAGA GACCGCGTTT
AATACCAACC TTGAAGCCGC TGACGAAATT GCTCGCCAAT TACGTTTACG TGACCTTGGT
GGTCTGATCG TTATCGACTT CATTGATATG ACCCCGGTAC GCCATCAACG TGAAGTTGAA
AACCGTTTAC GCGATGCTGT CCGTCAGGAC CGTGCCCGTA TCCAGATTGG TCGTATCTCA
CGCTTTGGTT TGCTGGAAAT GTCCCGTCAG CGCCTCAGCC CATCGCTGGG TGAATCCAGT
CACCACGTCT GCCCACGCTG TAGCGGTACC GGCACCGTAC GTGACAATGA ATCGCTGTCA
CTTTCTATTC TGCGTTTGAT TGAAGAAGAA GCGCTGAAAG AGAATACCCA TGAAGTTCAC
GCCATCGTAC CGGTACAAAT CGCATCGTAC CTGTTGAACG AAAAACGTGA ATCAGTAAAC
GCTATTGAGA AGCGTCAAGG TGGTGTCCGT GCCGTGATCG TGCCAAACGA TCAGATGCAA
ACACCGCACT ACTCTGTCCT GCGCGTACGC AAAGGCGAAG AAGTCCCGTC TCTCAGCTAT
CTGTTGCCAC AACTGCACGA AGCAGAAATG GCGCAACCGC TGGAAGAGGC CACCATTGAA
CGTAAGCGCC CGGAACAACC AGCATTGGCT ACCTTCTCTC TGCCAACAGA AGTGCCACCA
GAGGAGGCCC CTACCGTAGC CAAGGCTAAA CCTGCGGTTG CAACACCCGC CGCGGTTAGT
ACTGACGTAG AACAACCTGG CTTCTTTAGC CGTTTGTTCA GTGGCTTAAA AAATATGTTT
GGTGCTTCCG CTGAAGCAGA AGTGCAACCC GCTGAAGTTG TAAAAACCGA CGCTAGCGAA
AATCGCCGTA ATGATCGCCG CAATCCTCGC CGCCAGAATA ATGGCCGTAA AGAGCGCAAT
GATCGTACTC CACGCGAAGG TCGTGATAAT TCCAGCCGCG ATAACACCAA CCGTGATAAC
ACCAGTCGTG ATAACGCTAA CCGCGATGGC GCTAATCGTG ATAATTCCAA TCGCGACAAC
AGTGGCCGCG ATAACGTTAG TCGTGAAGGC CGCGAAGATC AACGCCGCAA CAACAGACGT
CCGGCCCAGC CAACGACAAC ATCGCAAGGG CAAACTGAGG TTGTTGAAGC CGATAAAGCG
CAACGTGAAG AACAACCACA GCGCCGTGGT GACCGTCAGC GTCGTCGTCA GGATGAGAAG
CGTCAGGCAC CACAAGAAAT CAAAGCAGAT GTTGCGGAAG CCCCTGTTAT AGAAGAGGTA
CAACCTGAGC AAGAAGAACG CCAACAGGTT ATGCAACGTC GTCAGCGTCG CCAGTTGAAT
CAGAAAGTCC GTATTCAATC GGCAAATGAT GAACTGAATA CGTTGGAATC TCCTGTCAGT
GCACCTGTTG CGCAGGTGGT GGTGGCTGAA GTACAAGAAG AAGTGAAGTT ACTGCCACAA
ATTACTGCTC AAACTGATGA TGACAGTGCT AATGAACGTA CTACCAATAA TGAAAATGGT
ATGCCACGTC GTTCCCGTCG TTCACCACGC CATCTGCGTG TTAGTGGTCA ACGCCGTCGC
CGTTATCGTG ATGAACGTTA CCCGGCACAA TCGGCCATGC CTCTGGCAGG GGCTTTTGCC
TCACCAGAAA TGGCATCCGG TAAAGTGTGG GTTCGTTATC CAGTGACGCC AGTCGTTGAA
CAGGTTGTCG TTGAACAGGT TGTCGTTGAA CAAATCGCCA TTGAACAAAC TACAACCGTT
GAGCAAACAG CCATCGTCGA GCAGGTCAGT GTAGCGAATA TTGTCACTGC GCAATTGCCT
GTAGAGCAGG TACAAAACAC CGTTGCAGAA CAAGAATCGA GTGCAACTCC ATCTGTTATG
ACAACACCAA CCGTTGCGGT AACACTGGCC CCACAACACA AACCGGGGGG TTCTTCATCT
TCGGCTGCTG CGGTTCCAGG CCGTGCACCT ATCGTTGCTG CAGTGCCTGT CGTTGCTGAA
ACGACTGCTG CTGAAACGGT TGTTGCTAAA ACTGAAGCCG CTATTGATGC GGTGGCTGTT
GTGGAACCGA TGGCTGCTGT GGAATCGATA GCTGCTGTGG AAACTGCAAC TGTAGAACCG
GTTGTTACAG AAGAACCGAA TGTCACAGAA CCGGCCGTTG CCGAGCCAGC GATTGAAACT
GATCCTGTCG AAGAAACAAC ATCAGTTGTA GAGATTGCTC CAACCGTTGA ATCAACGCCT
ATGATCGAAG ATACGGCTGT TGTAGTCGCT GCGACGGTGG TTGACACTAC ACCAGAAACT
GCGTCAACCG TGCAAGATGA TATTGTTGAA GAGACAGCAG TTGAAGCGGT AAATATCTCT
GAAACTGTGG CTGAAGAGAC CGCAATAACG GAACCTGCTG CTGAAGCCAT TGCTACTCAG
CAAACCACTA TTGCGCAGGA GACCATTGCT GAACCAACGG TTGAAACCGC TATTGATGTG
GTTGCGGTAG TCAAACAACC CGCGGTTGCG CATCCGGAAG GGGTGGTGTT CAAACACTTC
GCTTCAGCGC CAATGACCAA AGCGCCAGCA CCTGATTACG CCCCTGAATC ACCGACCAAA
GGTCACTGGG AGCGTCCAAC CTTTGATTTC TCAGGCAAAG GTTCTGCTGG GGGTCATGCC
GCGGCTACCC AGGCAACTGC ACCCGCGACC AAACCGCAAT CTGTTGAGTA A
 
Protein sequence
MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY 
GAERHGFLPL KEISREYFPN NYSSHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALSSLQL PDGMGLIVRT AGVGKSADAL
QWDLSFRLKH WDAIKKAAEG RPAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKVLELA
KEHIAALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE
NRLRDAVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTHEVH AIVPVQIASY LLNEKRESVN AIEKRQGGVR AVIVPNDQMQ
TPHYSVLRVR KGEEVPSLSY LLPQLHEAEM AQPLEEATIE RKRPEQPALA TFSLPTEVPP
EEAPTVAKAK PAVATPAAVS TDVEQPGFFS RLFSGLKNMF GASAEAEVQP AEVVKTDASE
NRRNDRRNPR RQNNGRKERN DRTPREGRDN SSRDNTNRDN TSRDNANRDG ANRDNSNRDN
SGRDNVSREG REDQRRNNRR PAQPTTTSQG QTEVVEADKA QREEQPQRRG DRQRRRQDEK
RQAPQEIKAD VAEAPVIEEV QPEQEERQQV MQRRQRRQLN QKVRIQSAND ELNTLESPVS
APVAQVVVAE VQEEVKLLPQ ITAQTDDDSA NERTTNNENG MPRRSRRSPR HLRVSGQRRR
RYRDERYPAQ SAMPLAGAFA SPEMASGKVW VRYPVTPVVE QVVVEQVVVE QIAIEQTTTV
EQTAIVEQVS VANIVTAQLP VEQVQNTVAE QESSATPSVM TTPTVAVTLA PQHKPGGSSS
SAAAVPGRAP IVAAVPVVAE TTAAETVVAK TEAAIDAVAV VEPMAAVESI AAVETATVEP
VVTEEPNVTE PAVAEPAIET DPVEETTSVV EIAPTVESTP MIEDTAVVVA ATVVDTTPET
ASTVQDDIVE ETAVEAVNIS ETVAEETAIT EPAAEAIATQ QTTIAQETIA EPTVETAIDV
VAVVKQPAVA HPEGVVFKHF ASAPMTKAPA PDYAPESPTK GHWERPTFDF SGKGSAGGHA
AATQATAPAT KPQSVE