| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1498 |
|---|
| Symbol | tam |
|---|
| ID | 5385936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1740114 |
|---|
| End bp | 1740890 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640864480 |
|---|
| Product | trans-aconitate 2-methyltransferase |
|---|
| Protein accession | YP_001400476 |
|---|
| Protein GI | 153949293 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4106] Trans-aconitate methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 6.87545e-17 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATT GGGATCCTGA TTTATATCGT CAATTTGAAG CCGAGCGCAC CCGCCCAGCC
ACTGATCTAT TAGCGCATAT CACGATAACC TCGCCGCAGT TCATCAGCGA TTTAGGCTGT
GGGCCAGGTA ACTCGACTGA ATTACTGCAT CGACGTTTTC CAGATGCCCA ATTGGTTGGT
ATTGATCATT CTCAGGCAAT GTTAGCCAGT GCACAGCAAC GCCTGCCACA TTGCACCTTT
GTTGAGGCGG ATATCCACCA ATGGCACCCT TCACAGCCGC AGAACCTTAT CTATGCTAAC
GCCTCATTAC AGTGGCTAAC CGATCACCCA CACCTGTTCC CGTCCCTGCT TTCACAGCTA
GCCCCCAAAG GGGTGCTGGC GGTTCAGATG CCGGATAATC TGGATCAACC CAGCCATCGC
GCTATGCGGG AAGTGGCCGA AAACGGCCCA TGGCAACAAA CCTTACAAGA AGCCGGCGCA
ACACGGGCGA AAGTGCTCTC GGCCAATCAC TATTATGATT TACTGGCTCC CCACGCTGAG
CGAGTCGATA TTTGGCGTAC AACCTATTAC CACCCGATGC CATCAGCGCA AGCAATTGTT
GACTGGCTGC GGGCAACGGG GCTACGCCCT TATCTTGCCC CCCTGACTGA AGCCATGCAG
TTGGCGTTCC TACAAAATTA TCTGGCCATC ATTGATAAGG CTTACCCCGC ACGGACTGAT
GGCCGCCGCT TGTTGGCTTT CCCACGTTTA TTTATTGTCG CCCATGCTCA AAGATAA
|
|---|
| Protein sequence | MQDWDPDLYR QFEAERTRPA TDLLAHITIT SPQFISDLGC GPGNSTELLH RRFPDAQLVG
IDHSQAMLAS AQQRLPHCTF VEADIHQWHP SQPQNLIYAN ASLQWLTDHP HLFPSLLSQL
APKGVLAVQM PDNLDQPSHR AMREVAENGP WQQTLQEAGA TRAKVLSANH YYDLLAPHAE
RVDIWRTTYY HPMPSAQAIV DWLRATGLRP YLAPLTEAMQ LAFLQNYLAI IDKAYPARTD
GRRLLAFPRL FIVAHAQR
|
|---|
| |