| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1482 |
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| Symbol | menD |
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| ID | 5387823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1724127 |
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| End bp | 1725830 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640864464 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_001400460 |
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| Protein GI | 153948006 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACAA GTGTTTTTAA CCGTCGTTGG GCGGCACTGC TACTGGAGGC TTTGACCCGC
CACGGTGTGC GTCATATCTG TATTGCCCCA GGGTCTCGCT CTACACCGTT AACGTTAGCG
GCTGCCGCTA ATCCGTCGTT GGTTTGCCAT ACCCATTTTG ATGAGCGCGG TCTGGGCCAT
CTGGCTCTGG GGCTGGCGAA GGCCTCAACA GAACCGGTGG CGGTCATTGT CACCTCGGGT
ACGGCGGTGG CGAATCTTTA TCCTGCGCTA ATCGAAGCGG GGTTAACGGG TGAGCGGTTG
ATATTATTGA CCGCTGATCG CCCACCGGAG TTAATCGATT GCGGTGCCAA TCAGGCTATC
CGCCAGCAGG GGCTGTTTGC CAGCCATCCA ACCCTAAGTG TTAATCTCCC CAGACCGACG
CCCGATATCT CTGCCCGTTG GTTGGTTTCC ACACTCGACA GCGCGATGGC GCAATTGCAA
CATGGCGCTT TGCACATTAA TTGTCCCTTT GCTGAACCAC TGTATGGGGG GGATGAGCAA
CAGTATGCCG ACTGGTCTGC CTCGCTGGGC GATTGGTGGC AGGATTGTCA CCCATGGCTG
CGTCAAACCT GTTACCCGCC CTCTCTTTAT CAACCACTTG CACAGCAAGC TGACTGGTTT
TTCTGGCGGC AAAAACGTGG AGTCGTGATT GCCGGGCGGA TGGGCGCGGA AGAGGGTAGG
CAACTGACCG CATGGGCTGC AATGCTGGGC TGGCCACTGA TTGGCGATGT ATTGTCACAA
ACGGGTCAGC CATTGCCTTG TGCTGACTTA TGGCTGGCGC ACCCACGGGC GCAAGAAACC
CTCGCTCAAG CACAGATTGT GTTGCAATTT GGCAGCAGTC TGACCAGTAA GCGCCTTTTG
CAATGGCAGA CTGCATGTCA GCCACAGGAA TACTGGCTGG TGGATAGCGC CCCAGGCCGC
CTTGATCCTG CTAACCATCG TGGCCGACGT ATTATTTGCC CGGTGGGCGA GTGGTTGAGT
CGGCACCCCG CGCAGCGGCG TACACCTTGG GCCACGGAAC TGGCGGCGTA TTCGGAAAGT
GCGCAAGCAC AGGTGATCGA GACGCTGGCC GGCCAATTCA GTGAGGCCGC CGTGGCACAT
CAGCTCGCGG AATTATTACC GGATAACGGC CAGCTATTTG TTGGCAACAG TTTGATTATT
CGGTTGATTG ATGCGTTGGG ACAGCTACCC GCAGGCTATC CGGTTTACAG CAACCGGGGG
GCCAGTGGTA TCGATGGTTT GCTGTCAACC GCCGCCGGTG TACAGCGCGC GACGGCGAAA
CCGACATTAG CTATCGTCGG TGATTTGTCT GCCTTATATG ACCTTAATGC GCTGGCACTT
TTGCGCCAGA GCTCGGCACC GATGGTGCTA CTGGTGATCA ATAACAATGG GGGGCAGATT
TTCTCTTTAT TGCCAACCCC AGAGGCCGAG CGCCAGCGTT TCTACTGTAT GCCGCAGGAT
GTGAACTTCG AACACGCAGC GGTTATGTTC AGCTTAGGTT ATGCCCGGCC TAATAGCTGG
CCTCAGCTAC GGGAGCACGT GCATCAATGC TGGCTACGGG GGGGAACCAC GCTGATTGAA
GTCCAGGTGC CACCAAGTCA GGGGGCAGAA ACACTGCAAC AGTTAGTACA ACAGGTGACA
TTAATACCGC AGGTGGCCCC ATGA
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| Protein sequence | MSTSVFNRRW AALLLEALTR HGVRHICIAP GSRSTPLTLA AAANPSLVCH THFDERGLGH
LALGLAKAST EPVAVIVTSG TAVANLYPAL IEAGLTGERL ILLTADRPPE LIDCGANQAI
RQQGLFASHP TLSVNLPRPT PDISARWLVS TLDSAMAQLQ HGALHINCPF AEPLYGGDEQ
QYADWSASLG DWWQDCHPWL RQTCYPPSLY QPLAQQADWF FWRQKRGVVI AGRMGAEEGR
QLTAWAAMLG WPLIGDVLSQ TGQPLPCADL WLAHPRAQET LAQAQIVLQF GSSLTSKRLL
QWQTACQPQE YWLVDSAPGR LDPANHRGRR IICPVGEWLS RHPAQRRTPW ATELAAYSES
AQAQVIETLA GQFSEAAVAH QLAELLPDNG QLFVGNSLII RLIDALGQLP AGYPVYSNRG
ASGIDGLLST AAGVQRATAK PTLAIVGDLS ALYDLNALAL LRQSSAPMVL LVINNNGGQI
FSLLPTPEAE RQRFYCMPQD VNFEHAAVMF SLGYARPNSW PQLREHVHQC WLRGGTTLIE
VQVPPSQGAE TLQQLVQQVT LIPQVAP
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