Gene YpsIP31758_1476 details

Gene Information

• Locus tag: YpsIP31758_1476
• Symbol: edd
• ID: 5386084
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 1717691
• End bp: 1719562
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640864458
• Product: phosphogluconate dehydratase
• Protein accession: YP_001400454
• Protein GI: 153950080
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 51
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCCCA TTATCACCCG TGTCACGCAG CGTATCATTG CGCGCTCAGC GGCCACACGC 
ACGGCATATC TGCAACGTAT CAGTGCAGCA AAAGAGCATA CCGTTCACCG TTCACAACTG 
GCTTGCGGTA ACCTGGCGCA CGGCTTTGCG GCTTGTCAGC CAGAGGATAA AGCGGCCCTA 
AAAAATAGGG TGCGTAGCGA TATCGCCATC ATTACGTCCT ATAACGATAT GCTGTCTGCT 
CATCAACCTT ATGAACATTA CCCACAACAA CTGAAAGACG CATTGCATGA GGTTGGGGCC 
ATTGGGCAGG TTGCCGGTGG GGTTCCTGCC ATGTGTGATG GGGTGACGCA AGGGCAGGAT 
GGGATGGAGT TGTCGCTAAT GAGCCGCGAT GTGATTGCTA TGTCAGCGGC TATTGGCCTG 
TCACACAATA TGTTTGATGG TGCTCTCTAC CTCGGTGTGT GCGATAAAAT CGTTCCCGGT 
TTGTTAATGG CAGCGCTGTC ATTTGGCCAT TTACCGGCTA TTTTTGTCCC CGCCGGGCCT 
ATGGCCAGCG GTTTGCCTAA CAAAGAGAAA GTCCGGATCC GCCAACTTTA CGCCGAGGGG 
AAAGTGGATA GGCAAGCCTT GTTGGAGGCT GAAGCCGCTT CGTATCACAG TGCCGGGACC 
TGTACTTTTT ACGGTACTGC CAATTCTAAT CAGATGGTGA TGGAAGTGAT GGGGCTGCAT 
TTGCCGGGAG CCTCTTTTAT CCAACCGAAT ACACCACTGC GTGATGCGCT GACTGCAGCG 
GCGGCACGTC AAATCACCCG TCTGACCGAA ACCGGCATCA ACTGTATTGA TAGTAATCAT 
ATTGATGGCA ATCATATTGA AAGCAACCAT ATCAACAGCA GCTATTTGCC TGTTGGCCAA 
TTGGTGGATG AAAAAGTGGT CGTCAATGGG ATTGTCGCGC TGTTGGCAAC CGGCGGTTCG 
ACTAATCACA CCTTACATTT GGTCGCGATG GCGCGGGCGG CGGGCATCAT CATTAATTGG 
GATGATTTCT CTGAACTGTC GGAAGCGGTG CCGCAGCTAT GCCGTATTTA CCCTAATGGC 
CCCGCGGACA TCAACTATTT TCAGGCATCG GGTGGTGTGG CACTGCTGGT TAATATGCTA 
TTGCAAGGCG GTTTACTGCA CGAAGAGGTG CATACCGTCG CTGGATTTGG TTTGCAGCGT 
TATACGCAAG AGCCTTATCT GGCGGCGGGT AAATTACAAT GGCGTCCTGG GCCGCAACAG 
TCACTGGATG CGACGGTGAT CGCCAGTCTG GAACAGCCTT TTTCTGCTCA GGGGGGGACG 
AAAGTATTAA ACGGCAATCT GGGGCGGGCG GTAATGAAAA CCTCGGCAGT GCCACGGGAG 
CATCAGGTTA TTGAAGGGCC AGCGCGGGTA TTTGAGAGTC AGCATGATGT GGAAGCCGCC 
TTTGAATCCG GTGATTTGGA TCGCGATTGT GTGGTGGTGG TGCGCTATCA GGGGCCGCAG 
GCCATTGGTA TGCCGGAGTT ACATAAGCTG ATGCCGCCGC TAGGAGTATT ACTTGATCGT 
GGCTTTAAGG TGGCGTTGGT GACGGATGGC CGATTATCCG GCGCATCAGG CAAGGTGCCG 
TCTGCCATTC ACGTGACGCC AGAAGCCTAT TGCGGTGGTT TACTGGCCAA CGTCCGCAAT 
GGTGACCGGA TTCGGGTTGA TGGGGTCAGT GGCGAGCTGT CATTACTGGT GGATGAGGCT 
GAATTGGCCA CTCGCGATAG TCCGTTACCG GCTATCTCTG CTTTCCATGT GGGATGTGGC 
CGTGAGTTGT TTGGGGCATT ACGTGAACAG CTTTCTGGTG CAGAGCAGGG GGCGTGTTGT 
ATTCGTTTCT AA 

 

Protein sequence

MNPIITRVTQ RIIARSAATR TAYLQRISAA KEHTVHRSQL ACGNLAHGFA ACQPEDKAAL 
KNRVRSDIAI ITSYNDMLSA HQPYEHYPQQ LKDALHEVGA IGQVAGGVPA MCDGVTQGQD 
GMELSLMSRD VIAMSAAIGL SHNMFDGALY LGVCDKIVPG LLMAALSFGH LPAIFVPAGP 
MASGLPNKEK VRIRQLYAEG KVDRQALLEA EAASYHSAGT CTFYGTANSN QMVMEVMGLH 
LPGASFIQPN TPLRDALTAA AARQITRLTE TGINCIDSNH IDGNHIESNH INSSYLPVGQ 
LVDEKVVVNG IVALLATGGS TNHTLHLVAM ARAAGIIINW DDFSELSEAV PQLCRIYPNG 
PADINYFQAS GGVALLVNML LQGGLLHEEV HTVAGFGLQR YTQEPYLAAG KLQWRPGPQQ 
SLDATVIASL EQPFSAQGGT KVLNGNLGRA VMKTSAVPRE HQVIEGPARV FESQHDVEAA 
FESGDLDRDC VVVVRYQGPQ AIGMPELHKL MPPLGVLLDR GFKVALVTDG RLSGASGKVP 
SAIHVTPEAY CGGLLANVRN GDRIRVDGVS GELSLLVDEA ELATRDSPLP AISAFHVGCG 
RELFGALREQ LSGAEQGACC IRF