Gene YpsIP31758_1363 details

Gene Information

• Locus tag: YpsIP31758_1363
• ID: 5385127
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 1598059
• End bp: 1598604
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640864345
• Product: frimbrial protein
• Protein accession: YP_001400342
• Protein GI: 153949911
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: 37
• Plasmid unclonability p-value: 0.463446
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTAAAT TAAATCTTGC TGTATGTGCA GTGGCTCTGT CTGTTATCTC TTCAACTTCT 
TATGCTGCTG CTGGCGGTAC TGTTACGTTC AACGGTAAAT TGATTGCTGA TACTTGTCAG 
GTTGATACCG CAAGCGAGAA TATCACGGTA ACACTGCCTA CTCTTTCTAT CCAGTCTTTG 
GCTGTAGCTG AAGCTCAAGA TGGTTCTAAG GACTTTGAAA TCAAAGTTCT GGATTGCCCG 
GCAACACTGA CTCAAGTCGG TGCCCATTTT AATGCGATTG ATAGCTCTGG TGTTAATCCG 
GCAACCGGTA ACTTGGTGAA CAAAGCACCA ACTGATGCTG CGGGTAATGT TGAAGTGCGT 
TTGTACAACG TTGATGACAG CAGCCAGATC CGTGTAGGTT CAACGGGTAA CATGGTTAAC 
ATCGTCAACG TAGGTGCTAC ATCAGGTACA GCTAATCTGA CCTATGCTGG TGGTTATTAT 
GCAACAGATG CAACTACCCC AGGTGAAGTG AATGCTAAAG TTGAATACGT TTTAGCTTAT 
AACTAA 

 

Protein sequence

MRKLNLAVCA VALSVISSTS YAAAGGTVTF NGKLIADTCQ VDTASENITV TLPTLSIQSL 
AVAEAQDGSK DFEIKVLDCP ATLTQVGAHF NAIDSSGVNP ATGNLVNKAP TDAAGNVEVR 
LYNVDDSSQI RVGSTGNMVN IVNVGATSGT ANLTYAGGYY ATDATTPGEV NAKVEYVLAY 
N