Gene YpsIP31758_1361 details

Gene Information

• Locus tag: YpsIP31758_1361
• ID: 5388400
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: -
• Start bp: 1592527
• End bp: 1594407
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640864343
• Product: hypothetical protein
• Protein accession: YP_001400340
• Protein GI: 153947692
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGATCACA AATTTCTTGA CTATTACAAT AAAGAACTCA CTTTTATGCG CGAAATGGCG 
CAAGAGTTTG CTGAAAAACA TCCCAAAATA GCAGGCCGTC TGGGCATGCA TGGGATTGAA 
GTCGCCGATC CTTACGTTGA GCGGCTGATA GAGTCCTTCT GTTTTTTATC TGCCAGAACG 
CAGATTAAGT TGGATGCTGA GTTTCCTAAA TTTACTCAGC GTCTTTTGGA CATTGTCTAT 
CCCAATTACA ATTCGCCAAC CCCCTCAATG GGCGTGATCC AACTTAAGCC AAATCTGAAG 
GAAGGGGATT TGACTCAAGG GTATTGTGTT CCTAGGGGCA GCTCGTTCTT CACCCATATC 
GCACCTGGCG AGACAACCCG CTGCGAGTTC CGTAGTGGTC AGGATGTGGA GTTGTGGCCA 
CTGGAAATAG CAGAAGCGCG TCTAAGCTCT GTTCCCCCGG ATATGCCTAA TCTGGAAAAG 
CACCGCATTG CCTATCATCG GCTTAAAGGT GCCTTACGCA TTAAATTAAA ATTAGTGGGC 
GATCTCACTT TCTCACAATT AGAAGGCCTT GATCGGCTGC CTATTTATAT TGATGGTGAT 
GAACGGATCG TTTCACATAT CTTCGAGCTG CTCCACGCCA GCCATGTTGC TACCATCATA 
CGGGCAGGCC ACGGAGAAAC AGCAAAAGAT ACCGTGATCA GTGATCAGCC ACTGTCCTTT 
GAAGGGCTAA GCCCCGACCA AAGCCTGCTG CCGCTATCAT GGAATATCTT TCACGGACAT 
AATCTGGTGC AGGAATACTT TACCTGCCGC CAGCGTTTCT ACTTTTTTAC GCTGACACAG 
CTGTCGCAAA GTTTGCGCGA TAATCATACC GGTGAAGCGG AAATCATCAT CCTACTGGAC 
AGATTACCGC AGGATTTGGT GAGCCATGTT GCCCCCTCTC GCTTCCTGTT AGCCTGCACG 
CCAGTGATTA ATCTCTTTCC TAAACGCATG GATAAGATCG AAATTAACCG TGCATTGAAC 
GATTTTCACG TAGTACCAGA CCGCAGCCGC CCACTGGATT ATGAAGTTTT CGCCATTAAT 
AAAGTATTTG GTCAACAGGC GGAAACCAGC AACGAGGTGG TATTTAACCC ACTTTATCAA 
ACCCGTCACT GTGATAATGG CAACTTTGGG CGTTATTTCT CCATCACCCG CAAGGCCAGA 
ACGGGCGATA GCAACAAAAG AAAATATGAC ACCCGCACGC CTTACGCCAG TACCGAGGTC 
TTTGTCTCGT TGGTCGATCA ACAAGAGGCG CCTTATGGCG ATAGCTTGCG CTACCTCTCT 
ATTGAAGCTC AGGTGACTAA TCGGGATCTT CCGCGCCTGA TTTCCGCCAG TGGTAATTTT 
GAATTGACCA TGTCGGATTC AGCGCCCGTT CACGGTGCCC GGTTTGTGTT CCAACCCAGC 
GCCCCACGCG CCCCCTTTGC CATGGATGAA TCCGCCTGGC GTTTGATTCG CCAATTGAGC 
TTCAACTATC TGCCACTGTC AGATATGTCC CACTCGAATG GGGGGGAGTC ACTGCGCAAT 
ATGCTACGTC TGTTTGTTAA CGCTTCAGAT CATGAATCGA ATACACAAAT TGACGCGCTG 
GTGGGCTGTA AAAGCGAGCC GGTGATCCGC CGGTTACCCG GCAATGGCCT ACTGGTTTAT 
GGCCGGGGCA TCTGCTGCAC CTTGACCGTG GATGAAGAAG GATTCTCCGG TATCAGCCCT 
TATCTATTTG GCATGATCAT GGAAAATTAT GTGGCCCGCC ATGCCGCAAT AAATGTGTTT 
ACCGAGACCG AGCTAAACTC CATGCAAAGA GGACGTGTCG GTCATTGGAA AGCCCGCCCT 
GGCAGACGAG GAGTCCTGTA A 

 

Protein sequence

MDHKFLDYYN KELTFMREMA QEFAEKHPKI AGRLGMHGIE VADPYVERLI ESFCFLSART 
QIKLDAEFPK FTQRLLDIVY PNYNSPTPSM GVIQLKPNLK EGDLTQGYCV PRGSSFFTHI 
APGETTRCEF RSGQDVELWP LEIAEARLSS VPPDMPNLEK HRIAYHRLKG ALRIKLKLVG 
DLTFSQLEGL DRLPIYIDGD ERIVSHIFEL LHASHVATII RAGHGETAKD TVISDQPLSF 
EGLSPDQSLL PLSWNIFHGH NLVQEYFTCR QRFYFFTLTQ LSQSLRDNHT GEAEIIILLD 
RLPQDLVSHV APSRFLLACT PVINLFPKRM DKIEINRALN DFHVVPDRSR PLDYEVFAIN 
KVFGQQAETS NEVVFNPLYQ TRHCDNGNFG RYFSITRKAR TGDSNKRKYD TRTPYASTEV 
FVSLVDQQEA PYGDSLRYLS IEAQVTNRDL PRLISASGNF ELTMSDSAPV HGARFVFQPS 
APRAPFAMDE SAWRLIRQLS FNYLPLSDMS HSNGGESLRN MLRLFVNASD HESNTQIDAL 
VGCKSEPVIR RLPGNGLLVY GRGICCTLTV DEEGFSGISP YLFGMIMENY VARHAAINVF 
TETELNSMQR GRVGHWKARP GRRGVL