Gene YpsIP31758_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1346 
Symbol 
ID5386584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp1576060 
End bp1576539 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content40% 
IMG OID640864328 
Producthypothetical protein 
Protein accessionYP_001400325 
Protein GI153947090 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAACA TGATTTATTT AACACTCAAG GGCAAAAAAC AGGGGTTAAT TTCGTCTGGG 
TGCTCATCAA TTGACTCAAT AGGCAATAAA AGTCAAGGCA GTCACATAGA TCAGATATTT
GTGCTCAGCC TTAATCACGC CATGACCCGA GAACAAAACG TCAGCCACCA CCCCATTTCT
TTTATAAAAC CTATCGATAA ATCATCCCCC TTATTAGGGG TAGCCATATC AGAAAATGAA
TTGCTTGATG CCGTTTTTGA CTTTTATAGA ACAAACAGCG CTGGTGCTTT AGAACTTTAC
TATACAATAT CCATTACCGG CGCGACAATT TCAGACATAT CAACTTCACA CAGCCATTCA
ATCACACACA ATGGCTCCCA ACCACAAGAA ACCATCTCTC TTAAATACAA AAGCATTACA
TGGAATCACA ATGTAGCAGG AACCAGTGGT TATAGCATAT GGGATGATCG CGTGTATTAA
 
Protein sequence
MANMIYLTLK GKKQGLISSG CSSIDSIGNK SQGSHIDQIF VLSLNHAMTR EQNVSHHPIS 
FIKPIDKSSP LLGVAISENE LLDAVFDFYR TNSAGALELY YTISITGATI SDISTSHSHS
ITHNGSQPQE TISLKYKSIT WNHNVAGTSG YSIWDDRVY