| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1326 |
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| Symbol | nupC |
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| ID | 5387188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1554532 |
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| End bp | 1555716 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640864308 |
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| Product | nucleoside transporter NupC |
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| Protein accession | YP_001400305 |
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| Protein GI | 153950768 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG1972] Nucleoside permease |
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| TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0000589339 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCATA TTCTACAGTT TGCGTTAGCC CTCGTTGTGG TAGCTATACT GGCTTTGGCA
ATCTGTAAAG ATCGTAAAAG CATCCGTATT CGATTTGTTA TTCAATTGTT GGTTATAGAA
GTGTTGCTGG CATACTTCTT CCTCCATTCG GAAGCTGGAC TGGGTTTTGT GAAAGGATTC
GCAGGGTTTT TCGACACATT GCTAGGATTT GCAGCCGCCG GTACCGATTT TGTCTTTAAT
GATATGGGTG ATAAAGGTCT CGCGTTCTTC TTCCTAAGAG TGTTGTGTCC TATTGTCTTT
ATTTCTGCAT TAATCGGTAT TTTGCAATAC ATCAAAGTTT TGCCGATCGT CATTCGTCTG
ATCGGTACAT TACTGTCCAA AGTTAACGGT ATGGGCAAAC TGGAATCATT CAACGCCGTC
AGTTCACTGA TTCTCGGACA ATCTGAAAAC TTTATTGCCT ATAAAGATAT TTTGGGCAAG
ATGTCTGAAA AACGCATGTA CACCATGGCG GCAACAGCAA TGTCGACCGT TTCCATGTCG
ATTGTTGGCG CTTATATGTC CATGCTGGAT GCGAAATTTG TGGTCGCCGC CTTGGTACTC
AACATGTTCA GTACCTTTAT CGTGTTGTCA TTGATCAACC CGTACAAAGT GGGCGAAGAA
CAAGATTTGC AACTGAGTAA TCTGCATGAA GGCCAAAGCT TCTTTGAAAT GCTGGGAGAA
TATATTCTGG CTGGTTTCAA AGTAGCCATT ATCGTTGCTG CAATGTTGAT TGGTTTCATC
GCGTTGATTG CTGCGGTGAA TGCTCTATTC ACCTTACTGT TCGGTATTAG CTTCCAAGGA
ATTTTGGGTT ATGTGTTCTT CCCGTTTGCT TGGGTGATGG GTATCCCTGC CCATGAGGCC
TTACAGGTCG GGAGTATCAT GGCAACCAAA CTGGTTTCTA ACGAATTCGT GGCAATGATG
GATTTGCAGA AAGTCGCTTC TCAACTTTCA CCACGCAGTG TGGGTATCCT GTCCGTGTTC
TTGGTTTCAT TCGCTAACTT CTCTTCTATC GGTATCGTCG CCGGTGCGAT TAAAGGCCTG
AATGAGCATC AAGGTAATGT GGTTTCCCGT TTTGGTCTGA AGCTGTTGTA TGGCTCCACG
TTGGTCAGTG TGCTGTCTGC TTCTATCGCG GGCTTGGTGC TCTAA
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| Protein sequence | MSHILQFALA LVVVAILALA ICKDRKSIRI RFVIQLLVIE VLLAYFFLHS EAGLGFVKGF
AGFFDTLLGF AAAGTDFVFN DMGDKGLAFF FLRVLCPIVF ISALIGILQY IKVLPIVIRL
IGTLLSKVNG MGKLESFNAV SSLILGQSEN FIAYKDILGK MSEKRMYTMA ATAMSTVSMS
IVGAYMSMLD AKFVVAALVL NMFSTFIVLS LINPYKVGEE QDLQLSNLHE GQSFFEMLGE
YILAGFKVAI IVAAMLIGFI ALIAAVNALF TLLFGISFQG ILGYVFFPFA WVMGIPAHEA
LQVGSIMATK LVSNEFVAMM DLQKVASQLS PRSVGILSVF LVSFANFSSI GIVAGAIKGL
NEHQGNVVSR FGLKLLYGST LVSVLSASIA GLVL
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