| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1288 |
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| Symbol | |
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| ID | 5384835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1507072 |
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| End bp | 1509351 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640864264 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001400267 |
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| Protein GI | 153947750 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.0916938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACACCA ATAGTAAAAA AACCTACCTT AGCATTGCTA TTTCATCCAT TCTTTACGCC
TCAACAGCAA TGAACGCAAA CGCCGATTCA TGTACTGATT ATACTGTCAC TGATATTTGT
GAGCAGAGTA AATATGGTGC GGGTGAATTT CATAATATTA AGCTGGGTGA TGGTGTCACT
GCTGGTAGCG AAGATCACCA TTTTGTCTTT AATGGTGAAG GATATGAATT ATACAATTCT
AACGCGAATT TCTCTGCTCA AATTGCCTCA GGTACCATTC GCTATACCGA AGTGAACAAC
AGTCACTTTA CTGTAAACGC TCACCATTTT CCGGATGATA CCATCTATGC CGGCCGTGCA
GAAAATACCA CATTGAATGA TAGCCTGATG TGGGTGGCAA CATCGGCTGA TCAGACACTG
GCTAAAGGTA ATTCAATGGT CGTTGTTTCC ACCCAAATGG CCATGGTTGA TCAAATTTTT
GTTACGACGT TGAATGATGG TAGCCTTCCA TTTGATCCCG TCACTACCAA TAGCCGCTAT
GAAGATACGT CATATGAAAT GTTATGGGGT ATGAAAAACG AGGCAAAAGG GTGGGATACC
AAAGCCACAT CGCATGACTC CGTATTTGTT GATGCCAGCA AGCAGTCTAT CGAAGCCAAT
GGTCACAGCA TTGGTGCCAC ATTTTATGGT AGGGCCACTC AGGTGGTCAA AGCTGGCGGT
GAGTCACAGG ATACCCACTT ATTTGATCAC AGTTATTCCT GGGTATATGC CGAGGCTAAA
TTAACCGGTC TGACGGAGGT TAATGACGCT GCCACTGTCT ATCTGAATGC CGCAGCAACT
CAAGGTGCTT ACGCTGAGAA TGTCGTTCTC AACGGCGAAG ATACAACATT GATGGTGCGC
GCGAGTCTGG ATAACAATGC CTATGCCACG GTGGATAACC TAATATTGAA TGGCGGTGAA
GTGGTTTTCC AGCAGAGCTC TGGCGACCAA TATGCTTCAT TAAACATCGG CACACTTTCC
GGCTCGGGCT CCTTCCTATT CAATACCTCT ATTGCTGAGG GGAAAGGAAA CTTCGTGACT
ATCGCCAATG CCAGTGGGGA ACATAAGGTG ATAGTTAACG ACTCTGGCCA TGAGATCACC
TCACCTGATA TGACCACATT GGACTTGATT CACGATCTCA GTGGTGATGC AACATTCACA
CTGGCCTCTA TTTCTGGAGC TAACATCATT GAAGTCGATG GCGGCACTTA CGTATATAGC
TTGAATACCT GGGATAATTC CGCACGAGCT GGCGGAAATC TGTGGTATTT AGGCTCAGGT
TTGAATACAG GCACTGAGCT TGAACCCGAA CCTGAAGAGA AAACAACCCC GTCAACGGAT
GCAGTGTTGA GTATGGCCTC ATCCAACCAG TTTATTTTCG ATGGTGAAAT GCAAAATCTG
CGTTTTCGTA AAGGGGATTT AAATAATAAT AAAGGTGATG GCGCCAGTGT TTGGGGGCGT
TATTTAACCA ACAATACTCG GGTCAATGCT GCTCATGATG CCGCTTACCG TTTGCAACAA
GATGGCTTTG AAATTGGTGC TGATAAAGTG CTGGAAATGT CTTCAGGCCA ATTAGTCTTG
GGCGGTTTTA CCTCTTATAG CAATAACCGA GTGAAACATG CTCGTAGTGG GAACAGTACG
GTTGATAGTT ATAGCTTGGG TGCCTACGGC ACTTATTTCG ATAACAGTGG TTATTATGTC
GATACCGTCG TTAAAGCCAA CCGTTTTAAA AACTCACTGA ATGCCCATAT GACCAACGGC
GGTTCGGTAC AAAGTGATTA TAACCAGAAT GCAATCGGTG GCTCACTGGA AGCCGGTTAT
CACTACAGCC TGTCGAATAA TTGGTTCGTA GAGCCTTATG TTCGTACCAG CTATTACACG
GCACAGGATA AAGATATTGT GCTGAATAAT GGCATGACAG CGAATATTGA TAATAACCGC
TCAGCTAAAG GTGAAATAGG TACACATCTG GGAACGAAGA TTGACCTGAA TAATGGGGCT
ATCATCCGCC CTTATGCCAA AGTCGCTATT GAACGAGAGT TCATCAAATC AAATACCGTG
ACGATCAATC AGGTTAACGA CTTTAATAAT GATTTATCAG GACATACCGC GAAGTATGGT
TTAGGCATGG ATATCAACCT GATGAAACAG ACTTCCGTTT ATGCCGAAGC CAATTACCGC
AACGGGACTC ATGTGGAGTC ACCTATCATG GCTAATATCG GTTTCCGGAT TAATTTCTAA
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| Protein sequence | MNTNSKKTYL SIAISSILYA STAMNANADS CTDYTVTDIC EQSKYGAGEF HNIKLGDGVT
AGSEDHHFVF NGEGYELYNS NANFSAQIAS GTIRYTEVNN SHFTVNAHHF PDDTIYAGRA
ENTTLNDSLM WVATSADQTL AKGNSMVVVS TQMAMVDQIF VTTLNDGSLP FDPVTTNSRY
EDTSYEMLWG MKNEAKGWDT KATSHDSVFV DASKQSIEAN GHSIGATFYG RATQVVKAGG
ESQDTHLFDH SYSWVYAEAK LTGLTEVNDA ATVYLNAAAT QGAYAENVVL NGEDTTLMVR
ASLDNNAYAT VDNLILNGGE VVFQQSSGDQ YASLNIGTLS GSGSFLFNTS IAEGKGNFVT
IANASGEHKV IVNDSGHEIT SPDMTTLDLI HDLSGDATFT LASISGANII EVDGGTYVYS
LNTWDNSARA GGNLWYLGSG LNTGTELEPE PEEKTTPSTD AVLSMASSNQ FIFDGEMQNL
RFRKGDLNNN KGDGASVWGR YLTNNTRVNA AHDAAYRLQQ DGFEIGADKV LEMSSGQLVL
GGFTSYSNNR VKHARSGNST VDSYSLGAYG TYFDNSGYYV DTVVKANRFK NSLNAHMTNG
GSVQSDYNQN AIGGSLEAGY HYSLSNNWFV EPYVRTSYYT AQDKDIVLNN GMTANIDNNR
SAKGEIGTHL GTKIDLNNGA IIRPYAKVAI EREFIKSNTV TINQVNDFNN DLSGHTAKYG
LGMDINLMKQ TSVYAEANYR NGTHVESPIM ANIGFRINF
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