Gene YpsIP31758_1255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1255 
SymboldapE 
ID5385882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp1474659 
End bp1475786 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content52% 
IMG OID640864232 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001400235 
Protein GI153947716 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCTGTC CGGTAATCGA ATTGGCCCAA CAGTTAATTA AACGCCCATC GCTCAGCCCT 
TCAGATGCGG GTTGCCAAGA GATCATGATC CAGCGCCTAG CCGCCATCGG CTTTACCATC 
GAACCCATGA ATTTTGGTGA TACGCTTAAT TTTTGGGCAT GGCGTGGCGA AGGCGAAACG 
CTGGCATTTG CTGGTCACAC GGATGTGGTG CCTACCGGTG ACGAGAGCCA CTGGCACAGC 
CCACCGTTTG AACCCACCAT CCGTGACGGC ATGTTGTATG GCCGAGGTGC CGCAGACATG 
AAAGGCTCAC TGGCAGCAAT GATCGTAGCA GCCGAGCGTT TTGTCGCCGC GCACCCTGAC 
CACAAAGGCC GCCTGGCCTT TATGATAACC TCCGATGAAG AAGCCAAAGC CATCAACGGT 
ACAGTAAAAG TGGTTGAAGC CCTGATGGCA CGCCACGAGC GGCTGGATTA TTGTCTAGTG 
GGCGAACCAT CCAGTACTGA CCGGGTTGGC GATATCGTGA AAAATGGCCG CCGTGGCTCC 
ATCACCGCTA ACTTGCGTAT TCATGGGGTG CAAGGGCACG TGGCGTATCC TCATCTGGCG 
GATAATCCCG TTCATCGTGC TATGCCAGCG CTGAATGAAT TGGTCGCCAC CCAATGGGAT 
GAAGGCAATG CGTTTTTCCC TGCCACCAGT ATGCAAATTG CCAATTTACA GGCCGGTACG 
GGCAGCAATA ATGTTATTCC CGGTGAATTT TATGTGCAGT TTAACTTCCG TTTCAGTACT 
GAACTGACTG ACAGCCTGAT CAAGCAACGG GTAGCCGCAT TGCTGGATCG ACATCAGCTT 
GATTACACCC TGGAATGGGT ATTGTCTGGT CAACCTTTCC TGACCGCCAA AGGGGCGTTG 
GTGGATGCCG TGGTTAATGC CGTTAAGCAT TACACTGAAA TCACACCGCA ACTGTTAACC 
ACCGGGGGGA CGTCAGATGG CCGCTTTATT GCGTTAATGG GGGCGCAAGT GGTTGAGTTG 
GGGCCAGTTA ATGCCACCAT TCATAAAGTT AATGAATGTG TTAGCGCGGC TGATTTACAA 
TTGCTCAGCC GTATGTACCA GAAAATCATG GAACAACTGA TCGCATGA
 
Protein sequence
MICPVIELAQ QLIKRPSLSP SDAGCQEIMI QRLAAIGFTI EPMNFGDTLN FWAWRGEGET 
LAFAGHTDVV PTGDESHWHS PPFEPTIRDG MLYGRGAADM KGSLAAMIVA AERFVAAHPD 
HKGRLAFMIT SDEEAKAING TVKVVEALMA RHERLDYCLV GEPSSTDRVG DIVKNGRRGS 
ITANLRIHGV QGHVAYPHLA DNPVHRAMPA LNELVATQWD EGNAFFPATS MQIANLQAGT 
GSNNVIPGEF YVQFNFRFST ELTDSLIKQR VAALLDRHQL DYTLEWVLSG QPFLTAKGAL 
VDAVVNAVKH YTEITPQLLT TGGTSDGRFI ALMGAQVVEL GPVNATIHKV NECVSAADLQ 
LLSRMYQKIM EQLIA