| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1214 |
|---|
| Symbol | mdtB |
|---|
| ID | 5385635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1427760 |
|---|
| End bp | 1430918 |
|---|
| Gene Length | 3159 bp |
|---|
| Protein Length | 1052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640864192 |
|---|
| Product | multidrug efflux system subunit MdtB |
|---|
| Protein accession | YP_001400195 |
|---|
| Protein GI | 153948688 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.243575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTGA TGCCTCCAAC ACCCGGTGGC GGGCCGTCAC GGCTGTTTAT TCTGCGCCCG
GTCGCCACCA CATTATTTAT GATCGCGATT TTACTGGCCG GGATTATCGG TTACCGCGCC
TTGCCGGTCT CGGCCCTGCC AGAGGTCGAT TACCCAACCA TTCAGGTGGT GACGCTCTAC
CCTGGAGCGA GCCCGGATGT CGTGACATCG TCAATTACCG CGCCGCTGGA ACGCCAGTTC
GGCCAGATGT CCGGCCTGAA ACAGATGGCC TCCCAAAGCT CGGGGGGCGC ATCGGTCATT
ACCTTGCAAT TCCAGCTCAC CTTGCCGCTG GATGTAGCAG AACAAGAAGT GCAGGCTGCC
ATTAACGCAG CGACCAACCT ACTGCCTTCC GACCTGCCTT ATCCACCGAT TTACAATAAA
GTGAATCCTG CGGATCCCCC CATTCTAACG CTGGCTGTAA CCGCGACCGC CATCCCCATG
ACACAAGTAG AAGACATGGT GGAAACCCGC ATTGCGCAGA AAATTTCACA AGTCACGGGT
GTCGGTTTAG TTACCCTCTC CGGTGGTCAG CGCCCGGCGG TACGGGTGAA ATTAAATGCG
CCTGCCGTGG CGGCACTGGG GCTGGACAGC GAGACCATTC GCACCGCCAT CAGTAATGCC
AACGTCAATT CCGCCAAAGG CAGTTTGGAT GGGCCAACCC GTTCGGTGAC GCTATCAGCC
AATGATCAGA TGAAGTCCGC CGAAGAGTAC CGTGACCTGA TCATCGCCTA CCAAAATGGT
GCGCCCATCC GCTTACAAGA TGTCGCCACC ATTGAACAAG GGGCGGAAAA TAACAAACTG
GCCGCCTGGG CCAATACTCA ATCAGCAATT GTGTTGAATA TCCAACGTCA ACCTGGGGTC
AATGTGATCG CCACCGCTGA CAGTATTCGC GAAATGCTGC CTGAGCTGAT CAAAAGCCTG
CCTAAATCGG TTGATGTCAA GGTGCTGACC GACCGCACCA GCACCATCCG CGCCTCGGTC
AATGATGTGC AATTCGAGTT ACTGCTGGCC ATTGCACTGG TCGTGATGGT GATTTATCTG
TTTCTGCGTA ATGCCGCCGC AACCATTATT CCCAGTATCG CGGTGCCGTT ATCGCTGGTC
GGTACCTTCG CCGCCATGTA TTTTCTGGGC TTTTCGATCA ATAACCTGAC ATTGATGGCC
CTCACCATCG CCACCGGTTT TGTGGTGGAT GACGCTATCG TGGTGATTGA AAATATCTCC
CGTTATATCG AAAAGGGAGA GAAGCCGCTC GATGCCGCGT TGAAGGGGGC CGGTGAGATC
GGTTTTACCA TTATTTCACT GACCTTCTCA TTGATTGCCG TGTTAATTCC GCTGCTGTTT
ATGGAGGATA TCGTTGGCCG GTTGTTCCGC GAATTTGCCG TGACGCTGGC GGTCGCTATC
CTGATCTCGG CGGTGGTTTC CCTGACCCTA ACACCGATGA TGTGCGCGCG GATGCTCAGT
TATGAGTCAC TGCGTAAACA AAACCGCCTG TCTCGCGCCA GTGAGAAATT CTTTGACTGG
GTGATCGCCC ATTATGCTGT CGCCCTGAAA AAAGTCCTGA ATCATCCGTG GCTGACCCTA
AGTGTCGCGT TCAGCACACT GGTGCTGACG GTGATACTTT ACTTGCTGAT CCCAAAAGGC
TTTTTCCCAT TACAAGACAA CGGGCTGATT CAAGGGACAC TGGAAGCGCC GCAATCCGTT
TCGTTCAGTA ATATGGCCGA ACGGCAGCAG CAGGTGGCCG CCATTATCCT CAAAGATCCG
GCAGTAGAAA GCCTGACCTC GTTTGTCGGC GTTGATGGCA CCAATGCCAC CCTCAATAAT
GGCCGTTTGC AGATCAACCT TAAACCGTTA AGTGAACGGG ATGATCGCAT TCCACAGATT
ATTACCCGTT TACAGGAGAG TGTCAGTGGG GTGCCCGGTA TCAAACTGTA TTTGCAGCCG
GTACAAGATT TGACCATTGA TACCCAGCTC AGCCGGACAC AATATCAGTT CACGCTGCAA
GCCACTTCGC TGGAAGAACT CAGTACCTGG GTGCCCAAAC TGGTCAATGA ATTGCAGCAA
AAAGCGCCGT TTCAGGATGT GACCAGTGAC TGGCAAGATC AGGGGCTGGT GGCGTTTGTT
AATGTGGATC GCGACAGTGC CAGCCGTTTG GGCATTACCA TGGCAGCCAT CGACAACGCC
TTGTATAACG CCTTTGGTCA ACGGCTGATT TCCACCATTT ATACGCAGTC CAATCAATAC
CGGGTGGTGT TAGAGCATGA TGTGCAAGCC ACGCCAGGAC TGGCGGCATT CAATGATATT
CGCCTGACCG GTAGCGATGG CAAAGGGGTG CCACTGAACA GTATTGCCAC CATTGAAGAG
CGTTTTGGGC CACTGTCTAT CAACCATTTG AATCAATTCC CGTCAGCAAC GGTATCGTTC
AATCTGGCGC AGGGTTACTC CCTCGGAGAG GCGGTAGCCG CCGTGACCTT GGCCGAAAAA
GAGATCCAAC TGCCTGCGGA TATCACCACG CGTTTCCAAG GCTCGACGCT GGCCTTCCAG
GCCGCATTGG GCAGTACGCT TTGGCTGATT ATCGCCGCCA TTGTGGCGAT GTATATTGTG
CTCGGCGTGT TGTATGAAAG TTTTATTCAT CCAATAACTA TTTTGTCCAC CTTGCCGACC
GCGGGTGTCG GGGCCTTGTT AGCGTTGATG CTAACCGGCA ATGAGCTGGA TGTGATTGCC
ATCATCGGGA TTATTTTGTT GATAGGCATC GTGAAAAAGA ACGCCATCAT GATGATCGAC
TTTGCCCTGG CTGCCGAGCG CGATCAGGGG ATGACGCCGT ATGACGCTAT CTATCAAGCC
TGTCTACTGC GTTTTCGCCC GATCCTGATG ACCACGCTGG CCGCGCTGTT CGGTGCCTTG
CCATTGATGT TGAGTACCGG TGTCGGTGCC GAACTCCGTC AACCGCTGGG GGTGTGTATG
GTCGGTGGGC TGATTGTCAG TCAGGTGCTG ACGCTGTTTA CCACGCCCGT TATTTACCTG
CTATTTGATA AATTGGCGCG GAATACTCGG GGGAAAAATC GCCATCGTGA TGAGGATATT
GACTCGTCTG AGTTGCTGAA CGGACAGGAG CCACAGTGA
|
|---|
| Protein sequence | MQVMPPTPGG GPSRLFILRP VATTLFMIAI LLAGIIGYRA LPVSALPEVD YPTIQVVTLY
PGASPDVVTS SITAPLERQF GQMSGLKQMA SQSSGGASVI TLQFQLTLPL DVAEQEVQAA
INAATNLLPS DLPYPPIYNK VNPADPPILT LAVTATAIPM TQVEDMVETR IAQKISQVTG
VGLVTLSGGQ RPAVRVKLNA PAVAALGLDS ETIRTAISNA NVNSAKGSLD GPTRSVTLSA
NDQMKSAEEY RDLIIAYQNG APIRLQDVAT IEQGAENNKL AAWANTQSAI VLNIQRQPGV
NVIATADSIR EMLPELIKSL PKSVDVKVLT DRTSTIRASV NDVQFELLLA IALVVMVIYL
FLRNAAATII PSIAVPLSLV GTFAAMYFLG FSINNLTLMA LTIATGFVVD DAIVVIENIS
RYIEKGEKPL DAALKGAGEI GFTIISLTFS LIAVLIPLLF MEDIVGRLFR EFAVTLAVAI
LISAVVSLTL TPMMCARMLS YESLRKQNRL SRASEKFFDW VIAHYAVALK KVLNHPWLTL
SVAFSTLVLT VILYLLIPKG FFPLQDNGLI QGTLEAPQSV SFSNMAERQQ QVAAIILKDP
AVESLTSFVG VDGTNATLNN GRLQINLKPL SERDDRIPQI ITRLQESVSG VPGIKLYLQP
VQDLTIDTQL SRTQYQFTLQ ATSLEELSTW VPKLVNELQQ KAPFQDVTSD WQDQGLVAFV
NVDRDSASRL GITMAAIDNA LYNAFGQRLI STIYTQSNQY RVVLEHDVQA TPGLAAFNDI
RLTGSDGKGV PLNSIATIEE RFGPLSINHL NQFPSATVSF NLAQGYSLGE AVAAVTLAEK
EIQLPADITT RFQGSTLAFQ AALGSTLWLI IAAIVAMYIV LGVLYESFIH PITILSTLPT
AGVGALLALM LTGNELDVIA IIGIILLIGI VKKNAIMMID FALAAERDQG MTPYDAIYQA
CLLRFRPILM TTLAALFGAL PLMLSTGVGA ELRQPLGVCM VGGLIVSQVL TLFTTPVIYL
LFDKLARNTR GKNRHRDEDI DSSELLNGQE PQ
|
|---|
| |