| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1213 |
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| Symbol | mdtC |
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| ID | 5385859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1424689 |
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| End bp | 1427763 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640864191 |
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| Product | multidrug efflux system subunit MdtC |
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| Protein accession | YP_001400194 |
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| Protein GI | 153947914 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000286734 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATTCT TCGCTCTGTT TATCCAGCGC CCGGTCGCCA CCACACTGTT GACGCTGGCG
ATCACCCTCA GTGGCATAAT TGGCTTTAGC CTACTGCCGG TATCGCCACT GCCGCAGGTT
GACTACCCGG TCATTATGGT CAGCGCCTCA ATGCCCGGTG CCGATCCAGA AACCATGGCC
TCGTCGGTTG CGACACCGTT GGAGCGCGCC TTGGGAAGAA TTGCCGGGGT GAATGAAATG
ACCTCGACCA GTTCGCTGGG TAGCACGCGG ATTATTCTGC AATTCGATCT TAACCGCGAT
ATCAACGGCG CGGCCCGTGA TGTGCAGGCG GCGCTCAATG CCGCCCAGAG CTTGCTGCCG
TCAGGGATGC CCAGCCGCCC AACCTATCGT AAAATGAACC CGTCTGATGC GCCGATTATG
ATCATGACGC TGACGTCAGA TACCTTCTCA CAGGGGCAAC TCTATGATTA TGCCTCGACC
AAACTGGCGC AAAAAATCGC CCAGACCGAG GGGGTCAGTG ATGTCACGGT GGGCGGCAGT
TCTTTACCTG CGGTGCGGGT CGAGCTAAAT CCCAGCGCCT TATTTAATCA GGGCGTATCA
CTGGATGCGG TGCGTCAAGC CATCAGTGCC GCCAACGTGC GCCGTCCACA AGGTTCAGTG
GATGCCGCAG AGACACATTG GCAGGTCCAA GCCAACGATG AGATCAAAAC CGCCGAGGGC
TACCGCCCGC TGATCGTCCA CTACAATAAT GGCTCGCCGG TACGGCTACA GGATGTCGCC
AATGTTATCG ACTCGGTGCA GGATGTTCGC AATGCGGGGA TGTCCGCAGG CCAACCGGCC
GTCTTGTTAG TGATCAGCCG TGAACCGGGG GCCAATATTA TTGCCACCGT AGACCGGATC
CGCGCGGAGT TACCCGCCTT ACGCGCCTCA ATCCCGGCCT CAATTCAGTT AAATATTGCT
CAAGATCGCT CACCCACCAT TCGCGCTTCA CTGGATGAGG TCGAGCGTTC ATTGGTCATT
GCGGTAGCCC TGGTCATTCT GGTGGTCTTT ATCTTCCTGC GTTCGGGTCG AGCCACATTG
ATCCCCGCCG TTGCTGTCCC CGTCTCATTG ATCGGTACGT TTGCCGCGAT GTACCTGTGC
GGTTTTAGTT TGAATAACCT GTCCCTAATG GCATTGACCA TTGCCACCGG TTTTGTGGTC
GATGATGCCA TCGTGGTGCT GGAAAATATT TCCCGCCATT TGGAAGCGGG TGTGAAACCG
ATGGTGGCCG CCCTACGTGG GGTCCGTGAA GTGGGTTTTA CCGTGCTATC AATGAGTATT
TCACTGGTGG CGGTATTTAT TCCTCTGCTA TTGATGGCGG GGCTACCGGG GCGTTTATTC
CGCGAATTTG CTGTCACACT GTCGGTGGCG ATTGGCATTT CACTGGTGAT ATCCCTGACC
CTAACGCCAA TGATGTGCGC CTGGTTGCTG CGTTCACACC CAAAAGGTCA GCAACAACGT
ATTCGCGGTT TTGGTAAAGT GCTATTAGCT ATTCAGCAAG GCTATGGTCG TTCACTGAAT
TGGGCCTTAG GCCATACCCG CTGGGTGATG GTTGTACTGC TTTCCACAAT TGCCCTGAAT
GTCTGGCTCT ATATCAGTAT CCCCAAAACC TTTTTCCCCG AGCAGGACAC CGGCCGGATG
ATGGGCTTTA TTCAGGCCGA TCAGAGTATT TCGTTCCAAT CGATGCAGCA AAAGCTGAAA
GATTTTATGC AGATCGTCGG GGCGGATCCG GCAGTGGACA GCGTCACCGG CTTTACGGGG
GGCTCGCGCA CTAACAGTGG ATCAATGTTT ATTTCACTGA AGCCGCTCAG CGAACGCCAG
GAAACCGCTC AGCAGGTGAT TACTCGCTTA CGCGGTAAAC TGGCCAAAGA GCCGGGGGCC
AACCTGTTCT TGTCTTCCGT GCAAGATATC CGAGTCGGTG GCCGTCATTC CAACGCCGCC
TACCAATTTA CCCTGTTGGC GGATGATCTG GCAGCACTGC GCGAATGGGA ACCCAAAGTC
CGGGCGGCGC TAGCCAAATT GCCACAATTG GCGGATGTAA ACTCAGATCA GCAAGATAAG
GGCGCGGAGA TGGCATTAAC TTATGATCGC GAAACCATGG CGCGGCTGGG TATTGATGTC
TCTGAAGCGA ATGCTCTGCT GAATAATGCT TTCGGCCAAC GGCAAATATC TACCATTTAT
CAGCCTCTAA ACCAATACAA AGTGGTGATG GAAGTGGCTC CTGAATATAC GCAGGATGTG
AGTTCGCTGG ATAAAATGTT TGTGATTAAC AGCAATGGTC AATCCATTCC GCTGTCCTAT
TTCGCTAAAT GGCAACCCGC CAACGCCCCG CTGGCGGTCA ATCACCAAGG CTTATCCGCC
GCTTCAACCA TCTCATTTAA CCTGCCAGAT GGCGGCAGCT TGTCTGAGGC CACGGCGGCT
GTCGAACGAG CGATGACAGA ACTGGGTGTC CCCTCCACCG TGCGTGGGGC GTTTGCCGGT
ACCGCTCAGG TATTCCAGGA AACGCTGAAA TCGCAGCTCT GGCTGATTAT GGCGGCCATC
GCCACGGTGT ATATCGTGCT GGGGATTTTA TACGAAAGTT ATGTTCACCC GCTGACCATC
CTCTCCACTT TACCGTCGGC AGGGGTCGGG GCGTTGCTGG CGCTGGAGTT ATTCGATGCA
CCGTTCAGCC TGATCGCCTT AATCGGTATT ATGTTGTTGA TTGGTATTGT GAAAAAGAAC
GCCATCATGA TGGTTGACTT CGCCCTGGAT GCGCAACGTA ATGGCAATAT CAGCGCCCGC
GAGGCTATTT TTCAGGCCAG TTTACTGCGT TTCCGGCCAA TCATCATGAC CACCTTAGCC
GCACTGTTTG GGGCGCTCCC CTTGGTGCTT AGCAGTGGTG ATGGTGCAGA GTTACGCCAG
CCGCTGGGGA TTACCATCGT CGGTGGGCTG GTCGTGAGCC AATTACTGAC GTTGTACACC
ACACCGGTGA TTTATCTCTA TTTTGACCGG TTGCGTAACC GTTTTAGCAA GCAACCGCTG
ATGAAATTGG AATAG
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| Protein sequence | MKFFALFIQR PVATTLLTLA ITLSGIIGFS LLPVSPLPQV DYPVIMVSAS MPGADPETMA
SSVATPLERA LGRIAGVNEM TSTSSLGSTR IILQFDLNRD INGAARDVQA ALNAAQSLLP
SGMPSRPTYR KMNPSDAPIM IMTLTSDTFS QGQLYDYAST KLAQKIAQTE GVSDVTVGGS
SLPAVRVELN PSALFNQGVS LDAVRQAISA ANVRRPQGSV DAAETHWQVQ ANDEIKTAEG
YRPLIVHYNN GSPVRLQDVA NVIDSVQDVR NAGMSAGQPA VLLVISREPG ANIIATVDRI
RAELPALRAS IPASIQLNIA QDRSPTIRAS LDEVERSLVI AVALVILVVF IFLRSGRATL
IPAVAVPVSL IGTFAAMYLC GFSLNNLSLM ALTIATGFVV DDAIVVLENI SRHLEAGVKP
MVAALRGVRE VGFTVLSMSI SLVAVFIPLL LMAGLPGRLF REFAVTLSVA IGISLVISLT
LTPMMCAWLL RSHPKGQQQR IRGFGKVLLA IQQGYGRSLN WALGHTRWVM VVLLSTIALN
VWLYISIPKT FFPEQDTGRM MGFIQADQSI SFQSMQQKLK DFMQIVGADP AVDSVTGFTG
GSRTNSGSMF ISLKPLSERQ ETAQQVITRL RGKLAKEPGA NLFLSSVQDI RVGGRHSNAA
YQFTLLADDL AALREWEPKV RAALAKLPQL ADVNSDQQDK GAEMALTYDR ETMARLGIDV
SEANALLNNA FGQRQISTIY QPLNQYKVVM EVAPEYTQDV SSLDKMFVIN SNGQSIPLSY
FAKWQPANAP LAVNHQGLSA ASTISFNLPD GGSLSEATAA VERAMTELGV PSTVRGAFAG
TAQVFQETLK SQLWLIMAAI ATVYIVLGIL YESYVHPLTI LSTLPSAGVG ALLALELFDA
PFSLIALIGI MLLIGIVKKN AIMMVDFALD AQRNGNISAR EAIFQASLLR FRPIIMTTLA
ALFGALPLVL SSGDGAELRQ PLGITIVGGL VVSQLLTLYT TPVIYLYFDR LRNRFSKQPL
MKLE
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