Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1184 |
Symbol | pilF |
ID | 5385804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1395044 |
End bp | 1395793 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640864161 |
Product | type IV pilus biogenesis/stability protein PilW |
Protein accession | YP_001400165 |
Protein GI | 153948563 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCTGA CAAAACTGTG GAGAGTTTGC CTGGTCGTAA GTGTATTGAC AGGGTGCTCC GGTACCCCAC CGGAGAACAC GAGTCAGGCA GTTGCTGGGC AGACACGCTT ACAACTGGGT TTAGCGTATT TGGCACAAGG CGATCTTACT GCCGCGCGGA AGAACCTTGA AAAAGCGGTA GAGGCGGATC CACAGGATTA TCGCACTCAA TTAGGGATGG CATTTTATGC GCAACGTATT GGTGAAAACA GTGCCGCAGA GCAGCGTTAT CAACAAGCAA TGAAACTGGC TCCGGGAAAT GGCACTGTAC TGAATAATTA CGGTGCGTTT CTGTGTAGTT TAGGGCAGTA TGTATCGGCG CAACAACAGT TTAGTGCTGC GGCATTGCTA CCTGATTACG GTCAGGTTGC TGATAGTCTG GAAAACGCAG GTTATTGCTT TTTACGGGCT AATCAGGATA AACAAGCTCG GGTCTTGTTG AGCCGGGCGT TGAAGTATGA TCCGGATAAA GGCGAGCCTT TGCTTGCGGA AGCCCAAAGG TATTTTGGGG AAGGTAATCG CGCACAAGCG CAACTATTAC TGGATGTTTA CCAACATACG CTTCCAGCCA GTGCTGAGAG TTTATGGTTA CAAATTCGTT TCGCCGCGCT GGCAGGCCGT CAAGATAGTG TACAACGCTA TGGCAAGCAG CTTGCGCGAA GTTTTCCACA ATCCAAACAG TACCAGCATT TTCTAGCTAA TGAATACTGA
|
Protein sequence | MKLTKLWRVC LVVSVLTGCS GTPPENTSQA VAGQTRLQLG LAYLAQGDLT AARKNLEKAV EADPQDYRTQ LGMAFYAQRI GENSAAEQRY QQAMKLAPGN GTVLNNYGAF LCSLGQYVSA QQQFSAAALL PDYGQVADSL ENAGYCFLRA NQDKQARVLL SRALKYDPDK GEPLLAEAQR YFGEGNRAQA QLLLDVYQHT LPASAESLWL QIRFAALAGR QDSVQRYGKQ LARSFPQSKQ YQHFLANEY
|
| |