Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1130 |
Symbol | rseA |
ID | 5384665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1331068 |
End bp | 1331724 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640864106 |
Product | anti-RNA polymerase sigma factor SigE |
Protein accession | YP_001400111 |
Protein GI | 153948051 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3073] Negative regulator of sigma E activity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.0835394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAAG AAAAGCTTTC CGCTTTGATG GATGGAGAAA CTCTCGATAG CGAGCTGCTG GGGATTTTAT CGAAAGATAA GGCGTTACAG CAAAGCTGGC AGAGCTACCA TTTAATCCGT GACACTCTAC GCGGAGACGT TGGCAATGTT TTACATCTGG ATATTGCTAG TCGTGTAGCA GAAGCGCTCA AGAACGAGCC AGCGCGCTTG ATTCCTATTG CTATACCTGA ATCTCAGCCA CAGCCACATC TTTGGCAGAA AATGCCTTTC TGGCAAAAAG TCCGTCCATG GGCCAGTCAG ATTACTCAGG TGGGAATGGC CGCTTGTGTT TCTCTCGCTG TCATTGTTGG TGTTCAACAA TATAACCAAC CGGCACAAAA TTATTTACAA CCTGAATCAC CGGCGTTTAA TACCTTGCCA ATGATGGGTA AAGCATCACC AGTCAGTTTT GGTGTCCCTG CTGATGGTTC TTTTGGTACT AATCAACAGA ATCAGGTTCA AGAGCAGCGT CGGCGCGTCA ACATGATGAC TCAATTGCAA GATTTTGAAT TGCAACGTCG TTTGCCACAA ACTGATGTAT TGCAGCAGCC TTCAGATTCA ACGCAAGCCG CAATTCAAGT CCCTGGAACT CAATCCTTAG GAATGCAGCA GCAGTAA
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Protein sequence | MQKEKLSALM DGETLDSELL GILSKDKALQ QSWQSYHLIR DTLRGDVGNV LHLDIASRVA EALKNEPARL IPIAIPESQP QPHLWQKMPF WQKVRPWASQ ITQVGMAACV SLAVIVGVQQ YNQPAQNYLQ PESPAFNTLP MMGKASPVSF GVPADGSFGT NQQNQVQEQR RRVNMMTQLQ DFELQRRLPQ TDVLQQPSDS TQAAIQVPGT QSLGMQQQ
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