Gene YpsIP31758_1129 details

Gene Information

• Locus tag: YpsIP31758_1129
• Symbol: rpoE
• ID: 5385286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 1330467
• End bp: 1331042
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640864105
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_001400110
• Protein GI: 153948527
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 0.0822674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAGC AGTTAACGGA TCAGATGCTG GTTGAACGGG TCCAGAAAGG CGATCAACAA 
TCGTTCAATT TACTGGTCAT TCGCTACCAG CATAAAGTTG CGAGCCTCGT ATCCCGGTAT 
GTGCCTCAGG GCGATGTCCC TGATGTTGTT CAGGAATCTT TTATTAAAGC GTATCGCGCA 
CTGGAGTCAT TTCGTGGTGA TAGCGCTTTT TATACGTGGC TATATCGGAT TGCTGTAAAT 
ACAGCGAAAA ATTACTTAGT CGCTCAGGGG CGGCGCCCGC CATCCAGTGA TGTGGATGCG 
AATGATGCTG AAAATTATGA AAATGCGGGT GCATTGAAAG AAATATCGAA CCCTGAGAAC 
TTAATGTTGT CTGAAGAATT AAGGCAGATA GTTTTTAAAA CCATAGAGTC ACTTCCTGAA 
GATCTTCGAA TGGCGATCAC ATTAAGGGAG CTAGATGGTC TAAGCTATGA AGAGATAGCA 
GCCATTATGG ACTGTCCGGT GGGTACTGTT CGTTCACGTA TCTTCCGTGC CAGAGAAGCT 
ATTGATAACA AAGTTCAGCC GCTAATTCAG CGATAG 

 

Protein sequence

MSEQLTDQML VERVQKGDQQ SFNLLVIRYQ HKVASLVSRY VPQGDVPDVV QESFIKAYRA 
LESFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA NDAENYENAG ALKEISNPEN 
LMLSEELRQI VFKTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA 
IDNKVQPLIQ R