| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1103 |
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| Symbol | kdpD |
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| ID | 5387085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1304629 |
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| End bp | 1307355 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640864079 |
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| Product | sensor protein KdpD |
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| Protein accession | YP_001400084 |
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| Protein GI | 153948325 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0538967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGATG CAGAACCAAC CCGTCCGAAC CCCGATAGCC TGTTAGCCGT GGCGAATGAA
AAACCTCGTG GCCGGTTAAA AGTCTTTTTT GGGGCCTGCG CCGGGGTAGG TAAAACCTAC
GCCATGCTGC AAGAGGCGCA ACGCTTGCGC GCTCAAGGGT TAGATGTGCT GGTCGGGGTG
GTGGAAACGC ACGGGCGCAG TGAAACCGCC GCCTTACTTG AAGGGCTAAC CGCCCTCCCC
CTGAAACGCA TCCACCACCG TAACCGCCAG ATACGTGAAT TTGATTTAGA TGCTGCGCTG
GCCCGCCGTC CCGCGCTGAT CCTCATGGAT GAACTGGCGC ACAGTAATGC CAATGGCTCC
CGCCATCCCA AACGCTGGCA AGATGTCGAA GAGCTATTGG ATGCAGGCAT TGATGTGCTG
ACCACCGTTA ATGTGCAGCA TTTAGAAAGC CTGAATGACG TGGTCGGCGG TGTGACCGGT
ATTCGGGTGC GTGAAACCGT GCCCGACCAT ATGTTCGACG AAGCCAGCGA AGTGGTTTTA
GTCGATTTAC CCCCCGATGA TCTGCGCCAA CGCCTCAATG AAGGCAAAGT GTATATCCCC
GGCCAAGCTG AGCGCGCCAT CGAACACTTT TTCCGTAAAG GGAATTTAAT CGCCCTACGT
GAGTTGGCGC TACGCCGTAC GGCCGATCGG GTTGATGATC AAATGCGCGC CTTCCGCGAT
ACCCAAGGGC GTGAACGGGT TTGGCATACT CGCGATGCCA TTTTGCTGTG TATCGGCCAC
CACGCGGGTA ATGAAAAGTT AGTGCGTACC GCCGCCCGGT TGGCCGCCCG CTTAGGCTGC
ATCTGGCATG CAGTCTATGT TGAAACCCCC CGGTTGCACG GCCTGCCAGA GGCTAAACGG
CGCGCTATCC TGCGCACCCT TAAACTGGCA CAAGAGTTAG GCGCGGAAAC CGCTACCTTA
TCGGACCCCA GTGAAGAACA GGCGGTATTG CGCTACGCCC GTGAACACAA TCTGGGGAAA
ATCATTATTG GCCGCCGCAC CGAGCAACAT TGGAAACTGC GAGGCAGTTT TGCCGATCGC
TTAGGTAAGC TGGGGCCAGA TCTGGATTTG GTGATTATTG CACTGGATGC CGATCCGCCA
ACCAATGTCG CTAAAGAACC AGACTCGCGC CCCTTCACCG AAAAATGGCG TATGCAGCTA
CGGGGATGTG TCGCCGCTAT CGCCCTGTGT GCGCTGATCA CCGTGCTATC GTTGTGGTTG
ATCCCCCGTT TCGATCAAGC CAATCTGGTG ATGGTTTACT TGTTGGGCGT GGTGATTATT
GCCCTGTTTT ATGGCCGCTG GCCTTCAGTG CTGGCGGCAG TGATTAATGT CGCCAGTTTC
GATCTGTTTT TTGTCCAACC GCACTGGTCA TTAGCCGTTA CCGATGTGCA ATATTTGCTG
ACTTTCGGTG TGATGCTGAT TGTCGGTATC GTGGTGGGGA ATCTGACCGC TGGGGTGCGC
TATCAGGCTA AAATTGCCCG TTATCGGGAA CAACGGGCCA GACATCTGTA TGAAATGTCT
CGCAGTTTAA GCCGTGCTCT GACACCGGAG GATATTGCCA AAACCAGCCG CCATTTTCTT
TCCAGCAGTT TTCAGGCCAA AACCAGCCTG CTACTGCCAC AGGAAGAGGG TCATTTACAG
CCAATAATGC CCGATGAAGG GGGCATCCTG TCCGTTGATG ATGCCATTGC CCATTGGAGT
TTTGATAAGG GTGCCCCTGC AGGAGCGGGC ACCGATACCC TGCCGGGCGT GCCCTACCAA
CTGCTGCCGT TGACGGCGGC TCAACAGACC TACGGCGTGC TGGCGATTGA ACCCGCTAAC
TTACGCCAAC TGATGGTGCC GGAGCAGCAA CGGCTGTTGC AAACATTTAC CAGCCTGATT
GCCAATGCAT TGGAAAGGCT ACATCTGGCC CGCAGTGCTG AACTGGCAAA ACTGGATGCT
GAACGGGAGC AATTGCGTAA TTCACTGCTG GCGGCATTGT CCCATGATTT GCGTACCCCG
CTCACCGTGT TATTCGGTCA GGCAGAAATT CTGACGCTGG ATCTGGCCGC CGAAGGTTCG
CGCCATGCCC CGCAGGCTAA CCAAATCCGC CAGCAGGTCT TGAGCACCAC CCGGTTGGTG
AACAATCTGC TGGATATGGC GCGTATTCAG TCTGGTGGTT TTAATCTACG TAAAGAGTGG
CAATCGCTGG AAGAGATTAT TGGCAGCGCC CTGCATATGC TGGAAACCAC ATTAAGTCAG
CATCAAATAC GCGTTGAATT GCCGGATGAA ATGGTGTTGA TCAATTGCGA CGCAAGCTTG
CTGGAGCGGG TCTTTATCAA CCTCCTGGAA AATGCCCATA AATATGCAGG TCACGCCGCC
TTGTTGGGTA TCCGGGCGGA AGTGAAAGGC GAGTGGTTAA ATGTGGACGT GTGGGATAAT
GGCCCCGGAG TCACCATCGG TCAGGAAAAT CTTATTTTTG ATAAGTTTTC CCGCGGGAAT
AAAGAGTCTG CCATTCCGGG TGTTGGCTTG GGTTTAGCCA TTTGTCGTGC CATTATTGAT
GTCCACGGCG GGCGTATCTG GGTGGAGAAG CGTCAAGAGG GCGGAGCCAG CTTCCGTTTT
GTTTTGCCAC TGGAAAAAGC GCCGGAAATT GATGCCGACA ATATTGATAC CAACAATATT
GATACTGAAA ATAATGATAT ATCCTGA
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| Protein sequence | MVDAEPTRPN PDSLLAVANE KPRGRLKVFF GACAGVGKTY AMLQEAQRLR AQGLDVLVGV
VETHGRSETA ALLEGLTALP LKRIHHRNRQ IREFDLDAAL ARRPALILMD ELAHSNANGS
RHPKRWQDVE ELLDAGIDVL TTVNVQHLES LNDVVGGVTG IRVRETVPDH MFDEASEVVL
VDLPPDDLRQ RLNEGKVYIP GQAERAIEHF FRKGNLIALR ELALRRTADR VDDQMRAFRD
TQGRERVWHT RDAILLCIGH HAGNEKLVRT AARLAARLGC IWHAVYVETP RLHGLPEAKR
RAILRTLKLA QELGAETATL SDPSEEQAVL RYAREHNLGK IIIGRRTEQH WKLRGSFADR
LGKLGPDLDL VIIALDADPP TNVAKEPDSR PFTEKWRMQL RGCVAAIALC ALITVLSLWL
IPRFDQANLV MVYLLGVVII ALFYGRWPSV LAAVINVASF DLFFVQPHWS LAVTDVQYLL
TFGVMLIVGI VVGNLTAGVR YQAKIARYRE QRARHLYEMS RSLSRALTPE DIAKTSRHFL
SSSFQAKTSL LLPQEEGHLQ PIMPDEGGIL SVDDAIAHWS FDKGAPAGAG TDTLPGVPYQ
LLPLTAAQQT YGVLAIEPAN LRQLMVPEQQ RLLQTFTSLI ANALERLHLA RSAELAKLDA
EREQLRNSLL AALSHDLRTP LTVLFGQAEI LTLDLAAEGS RHAPQANQIR QQVLSTTRLV
NNLLDMARIQ SGGFNLRKEW QSLEEIIGSA LHMLETTLSQ HQIRVELPDE MVLINCDASL
LERVFINLLE NAHKYAGHAA LLGIRAEVKG EWLNVDVWDN GPGVTIGQEN LIFDKFSRGN
KESAIPGVGL GLAICRAIID VHGGRIWVEK RQEGGASFRF VLPLEKAPEI DADNIDTNNI
DTENNDIS
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