Gene YpsIP31758_1017 details

Gene Information

• Locus tag: YpsIP31758_1017
• Symbol: dxr
• ID: 5385708
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 1219244
• End bp: 1220440
• Gene Length: 1197 bp
• Protein Length: 398 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640863990
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: YP_001400001
• Protein GI: 153948946
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00000000000443544
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCAAC TGACTATTCT TGGCTCTACT GGCTCCATCG GCAACAGCAC GTTGAGTGTT 
GTGCGTGCAA ACCCTGAATT ATTTAAAGTC ACGGCGTTAG TTGCCGGGCG TAATGTCAGG 
GAAATGGCGC AGCAATGCCT TGAGTTCTCC CCCCGCTATG CAGCTATGTC TGATGAACAC 
TCAGCTAAAT CACTGCGTTT ATTGTTGGCA GAACAGGGTT CAGACACCGA GGTCTATTCC 
GGTGAAACGG CTGCCTGCGA ATTGGCAGCT TTAGATGATG TCGATCAAGT GATGGCCGCG 
ATTGTTGGCA TTGCTGGTTT ACCCTCAACA TTGGCCGCTA TTCGTGCAGG TAAACAAGTC 
TTGCTTGCCA ATAAAGAGTC GCTGATTACC TGCGGTAAAC TCTTTATGGA TGAGGTTAAA 
CGCAGCCGTG CTCAATTACT GCCAATTGAT AGCGAGCATA ACGCGATTTT TCAGAGTTTG 
CCTGAAAGAA TTCAGCGCCA ATTAGGCTAT TCTTCATTAA ATGAAAATGG CGTTTCACGG 
ATTATTTTGA CTGGCTCTGG TGGCCCATTT CGTGAAACTC CACTTTCGCA GTTTTCTGAT 
GTCACCCCAG ATCAAGCTTG TGCTCATCCA AATTGGTCTA TGGGGCGGAA AATTTCTGTC 
GACTCAGCGA CGATGATGAA TAAAGGCCTG GAGTATATTG AGGCTCGATG GTTATTTAAT 
GCCAGCGCAG AACAGATAGA GGTTGTGTTA CATCCGCAGT CTGTTATTCA CTCGATGGTT 
CGCTATCATG ACGGAAGTAT CCTGGCACAA ATGGGGACTC CAGACATGCG GACACCGATT 
GCACATGCGA TGGCTTACCC AATGCGAGTT AGCTCAGGTG TTGCGCCATT GGATTTTTGC 
AAAGTAGGCG CGCTGACCTT TACAACCCCG GATTATCAAC GTTATCCGTG CTTAAAGTTG 
GCCATAGACG CCTGTAATGC GGGGCAGGCA GCGACAACAG CGCTGAATGC AGCAAATGAA 
ATTTCAGTCA TGGCATTTTT AGATTCAAAA ATTCGTTTCA CTGATATTGA AGTGATTAAC 
CGTACTGTTG TTGAAGGTTT ATTATTATCA GAACCTACCA GTGTGGAAGA GGTGTTGGTG 
ATTGATCGCA AAGCTCGTGA TGTCGCGGCC CAAGTCATTG CAAAATTAAA TAATTAA 

 

Protein sequence

MKQLTILGST GSIGNSTLSV VRANPELFKV TALVAGRNVR EMAQQCLEFS PRYAAMSDEH 
SAKSLRLLLA EQGSDTEVYS GETAACELAA LDDVDQVMAA IVGIAGLPST LAAIRAGKQV 
LLANKESLIT CGKLFMDEVK RSRAQLLPID SEHNAIFQSL PERIQRQLGY SSLNENGVSR 
IILTGSGGPF RETPLSQFSD VTPDQACAHP NWSMGRKISV DSATMMNKGL EYIEARWLFN 
ASAEQIEVVL HPQSVIHSMV RYHDGSILAQ MGTPDMRTPI AHAMAYPMRV SSGVAPLDFC 
KVGALTFTTP DYQRYPCLKL AIDACNAGQA ATTALNAANE ISVMAFLDSK IRFTDIEVIN 
RTVVEGLLLS EPTSVEEVLV IDRKARDVAA QVIAKLNN