Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0954 |
Symbol | gspE |
ID | 5387911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1143727 |
End bp | 1145238 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640863920 |
Product | general secretory pathway protein E |
Protein accession | YP_001399938 |
Protein GI | 153950397 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.120459 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGATA TTGAGTCTGA GTTCCATACT TTGCCATTAA CGTTTAGTTG GTCAAAGAGT CATGGTGTGC TTATTCTGCC TATGGCACAG GGCAGTCAGT TGATTTGTCG TAAATCAGCG ACATTGGAGG CTATACTTGA AGGTAATCGG GTGGCTCATA GTCCAATACT TTTTAATTTA GTTACTGATG AAGAGTTTGA AAATAATTTA ACTGAACGCT ACCAAAATAA TTCGGCTGAC CCATATCAGA CAATGAGCGT TATCAGCAAT GAGATCGATA TTTACTCTTT TGCTAACGAA TTATCTGACG ATGATGATTT ATTGGATGTA ACTGATGAAG CACCTGTAAT AAAATTAATC AATAGCATTC TGGTCGAAGC AATTAAAGAG TTAGCATCTG ATATACACAT AGAGTCTTTC GATAAAAAAC TTACTGTAAG ATTTCGTATT GATGGTGTGT TAAGGAAAAT ATTGGAATTA CAGCGCCATG TTGCACTATT ATTAGTGTCG CGTATAAAAG TTATGGCCAA ATTAGATATT GCAGAAAAAC GTATTCCACA AGATGGGCGC ATAGCTCTAA ATTTAGCGGG TAGAGCATTG GATGTTCGTG TTTCGGTATT ACCATCTAGC CATGGTGAAC GGGTCGTTAT GCGTTTGCTT GACAAAAATA GCATTAAATT GGATTTACCC TCATTAGGTA TGTCGAAAGA TAACTGTATT TCTATGAATA CGCAGGTACA TAAACCCCAT GGCATTATCT TGGTTGTTGG CCCAACGGGG TCGGGTAAAA GCACTACGTT ATATGCTGCT TTAATGGGGA TTGACGCGAA TGAGAAAAAT ATTATGACTG TAGAAGACCC TATTGAGTTC GACATACCTG GTATATCCCA AACGCAAGTA AACCCAAAAA TTGAAATGAC ATTTGCTCGT AGCTTAAGGG CAATATTACG CCAAGATCCT GACGTTATTC TTATCGGTGA AATTCGTGAT ATTGAAACGG CACAGATAGC GGTTCAAGCT TCTCTAACCG GCCATTTAGT TCTATCTACA TTACATGCCA ACAGTGCGAT AGGTGCAGTG ACCAGACTGA AGGATATGAA TGTAGAGGCA TTTATGCTTT CAAGTTCATT ATTGGCCATC ATATCTCAGC GGTTGGTTAG AAGATTATGT ATAGCGTGTC GCCAAGAGTC GTCAGTGACG GAGAAGGTAT TACAACGTCT GAATATTGAT GATAAATGCT CTTTGGTTGG TTCGGTGTAC CGGGCTAAAG GTTGTAACAA ATGTAATCTT ACTGGTTATC GTGGACGTAT TGCTCTCCAT GAATTTCTCG TAGTGGATAA CTTATTGCGG GGGGCTATTT ATAAAGGACT AGGAGAGTTT GAACTGGCTA AATTAGCCAG TGGGGCTATA AACAGCCTTC TATCTGATGG GATAAGCAAA GTCATTGCAG GATTAACCAC TATAGAGGAA CTGGTAAGAA TATGCCAAGA GGATGATAAT GGCTGTATTT AA
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Protein sequence | MTDIESEFHT LPLTFSWSKS HGVLILPMAQ GSQLICRKSA TLEAILEGNR VAHSPILFNL VTDEEFENNL TERYQNNSAD PYQTMSVISN EIDIYSFANE LSDDDDLLDV TDEAPVIKLI NSILVEAIKE LASDIHIESF DKKLTVRFRI DGVLRKILEL QRHVALLLVS RIKVMAKLDI AEKRIPQDGR IALNLAGRAL DVRVSVLPSS HGERVVMRLL DKNSIKLDLP SLGMSKDNCI SMNTQVHKPH GIILVVGPTG SGKSTTLYAA LMGIDANEKN IMTVEDPIEF DIPGISQTQV NPKIEMTFAR SLRAILRQDP DVILIGEIRD IETAQIAVQA SLTGHLVLST LHANSAIGAV TRLKDMNVEA FMLSSSLLAI ISQRLVRRLC IACRQESSVT EKVLQRLNID DKCSLVGSVY RAKGCNKCNL TGYRGRIALH EFLVVDNLLR GAIYKGLGEF ELAKLASGAI NSLLSDGISK VIAGLTTIEE LVRICQEDDN GCI
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