Gene YpsIP31758_0954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0954 
SymbolgspE 
ID5387911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp1143727 
End bp1145238 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content39% 
IMG OID640863920 
Productgeneral secretory pathway protein E 
Protein accessionYP_001399938 
Protein GI153950397 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.120459 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATA TTGAGTCTGA GTTCCATACT TTGCCATTAA CGTTTAGTTG GTCAAAGAGT 
CATGGTGTGC TTATTCTGCC TATGGCACAG GGCAGTCAGT TGATTTGTCG TAAATCAGCG
ACATTGGAGG CTATACTTGA AGGTAATCGG GTGGCTCATA GTCCAATACT TTTTAATTTA
GTTACTGATG AAGAGTTTGA AAATAATTTA ACTGAACGCT ACCAAAATAA TTCGGCTGAC
CCATATCAGA CAATGAGCGT TATCAGCAAT GAGATCGATA TTTACTCTTT TGCTAACGAA
TTATCTGACG ATGATGATTT ATTGGATGTA ACTGATGAAG CACCTGTAAT AAAATTAATC
AATAGCATTC TGGTCGAAGC AATTAAAGAG TTAGCATCTG ATATACACAT AGAGTCTTTC
GATAAAAAAC TTACTGTAAG ATTTCGTATT GATGGTGTGT TAAGGAAAAT ATTGGAATTA
CAGCGCCATG TTGCACTATT ATTAGTGTCG CGTATAAAAG TTATGGCCAA ATTAGATATT
GCAGAAAAAC GTATTCCACA AGATGGGCGC ATAGCTCTAA ATTTAGCGGG TAGAGCATTG
GATGTTCGTG TTTCGGTATT ACCATCTAGC CATGGTGAAC GGGTCGTTAT GCGTTTGCTT
GACAAAAATA GCATTAAATT GGATTTACCC TCATTAGGTA TGTCGAAAGA TAACTGTATT
TCTATGAATA CGCAGGTACA TAAACCCCAT GGCATTATCT TGGTTGTTGG CCCAACGGGG
TCGGGTAAAA GCACTACGTT ATATGCTGCT TTAATGGGGA TTGACGCGAA TGAGAAAAAT
ATTATGACTG TAGAAGACCC TATTGAGTTC GACATACCTG GTATATCCCA AACGCAAGTA
AACCCAAAAA TTGAAATGAC ATTTGCTCGT AGCTTAAGGG CAATATTACG CCAAGATCCT
GACGTTATTC TTATCGGTGA AATTCGTGAT ATTGAAACGG CACAGATAGC GGTTCAAGCT
TCTCTAACCG GCCATTTAGT TCTATCTACA TTACATGCCA ACAGTGCGAT AGGTGCAGTG
ACCAGACTGA AGGATATGAA TGTAGAGGCA TTTATGCTTT CAAGTTCATT ATTGGCCATC
ATATCTCAGC GGTTGGTTAG AAGATTATGT ATAGCGTGTC GCCAAGAGTC GTCAGTGACG
GAGAAGGTAT TACAACGTCT GAATATTGAT GATAAATGCT CTTTGGTTGG TTCGGTGTAC
CGGGCTAAAG GTTGTAACAA ATGTAATCTT ACTGGTTATC GTGGACGTAT TGCTCTCCAT
GAATTTCTCG TAGTGGATAA CTTATTGCGG GGGGCTATTT ATAAAGGACT AGGAGAGTTT
GAACTGGCTA AATTAGCCAG TGGGGCTATA AACAGCCTTC TATCTGATGG GATAAGCAAA
GTCATTGCAG GATTAACCAC TATAGAGGAA CTGGTAAGAA TATGCCAAGA GGATGATAAT
GGCTGTATTT AA
 
Protein sequence
MTDIESEFHT LPLTFSWSKS HGVLILPMAQ GSQLICRKSA TLEAILEGNR VAHSPILFNL 
VTDEEFENNL TERYQNNSAD PYQTMSVISN EIDIYSFANE LSDDDDLLDV TDEAPVIKLI
NSILVEAIKE LASDIHIESF DKKLTVRFRI DGVLRKILEL QRHVALLLVS RIKVMAKLDI
AEKRIPQDGR IALNLAGRAL DVRVSVLPSS HGERVVMRLL DKNSIKLDLP SLGMSKDNCI
SMNTQVHKPH GIILVVGPTG SGKSTTLYAA LMGIDANEKN IMTVEDPIEF DIPGISQTQV
NPKIEMTFAR SLRAILRQDP DVILIGEIRD IETAQIAVQA SLTGHLVLST LHANSAIGAV
TRLKDMNVEA FMLSSSLLAI ISQRLVRRLC IACRQESSVT EKVLQRLNID DKCSLVGSVY
RAKGCNKCNL TGYRGRIALH EFLVVDNLLR GAIYKGLGEF ELAKLASGAI NSLLSDGISK
VIAGLTTIEE LVRICQEDDN GCI