| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0887 |
|---|
| Symbol | |
|---|
| ID | 5384556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 1070667 |
|---|
| End bp | 1071029 |
|---|
| Gene Length | 363 bp |
|---|
| Protein Length | 120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640863853 |
|---|
| Product | helix-turn-helix DNA binding domain-containing protein |
|---|
| Protein accession | YP_001399871 |
|---|
| Protein GI | 153950237 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2522] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 56 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC TACAATACAT TCATGATGAA GCAGGAAAGC CTCAGTTTGT GGTTTTACCC
GTTGCCGAAT ACCAGCAGCT TATCTCTAAT GCAAAGTATG AGGATATTCC CTATGTTGCT
GATAACGATG ATGATCAGAC GATCCCGAAT GAAGTTGTTC AAATCATGGT AAACGATGGT
GTCAGTTTGC TGGCTGCATG GCGTATCTAC CGTGGTTTTT CGCAATATGA AATAGCAGAA
CTGCTTGGCA CCACCCAATC TGCTGTATCC CAATGGGAAG CCGTAGATTC TCGCCCACAG
AAGAAAACCA GAGAGAAGCT AGCGGTCATT TATAAGTGCC GGGCGGCGCA GATGATTTTG
TGA
|
|---|
| Protein sequence | MAKLQYIHDE AGKPQFVVLP VAEYQQLISN AKYEDIPYVA DNDDDQTIPN EVVQIMVNDG
VSLLAAWRIY RGFSQYEIAE LLGTTQSAVS QWEAVDSRPQ KKTREKLAVI YKCRAAQMIL
|
|---|
| |