Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0879 |
Symbol | xerD |
ID | 5384377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1061642 |
End bp | 1062541 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640863844 |
Product | site-specific tyrosine recombinase XerD |
Protein accession | YP_001399863 |
Protein GI | 153948372 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 0.201006 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGC AAGATAACCC GCTGATTGAA CAATTTCTTG ATGCTCTGTG GCTGGAACGA AATCTGGCAG AGAATACACT GGCGTCATAC CGTTTGGATT TACATGCGCT GGTTGGATGG TTGACACACC ATAACAGTGA TTTATTGCGC GCCAGCCCGC AGGACTTGCA ATCCTTCCTT GCTGAACGGA TCGAGGGTGG CTATAAAGCC ACCAGCTCGG CTCGTTTACT CAGTGCGATG CGCCGGTTAT TTCAATATTT ATACCGGGAG AAACTGCGTG AGGATGATCC GACTGCGCTG CTCTCTTCAC CCAAATTACC GCAGCGCTTG CCGAAGGATT TAAGTGAGGC ACAGGTCGAT GCGTTACTTA ACTCGCCCAA TGTGGACATT CCCTTGGAAC TGCGCGATAA AGCAATGCTG GAAGTGCTCT ATGCCACCGG CTTGCGGGTG TCAGAATTGG TCGGGCTGAC CATCAGTGAT GTTAGTCTAC GCCAAGGTGT GGTGAGAGTG ATTGGTAAAG GGAATAAAGA GCGCTTGGTC CCCTTGGGGG AAGAAGCTGT GTATTGGATT GAGAACTATA TGGAGCATGG CCGGCCTTGG TTGGTTAATG GCGCATCGCT GGATGTATTG TTCCCCAGTA ACCGTAGCCA GCAAATGACC CGTCAGACTT TCTGGCATCG CATCAAACAC TATGCGATCC TTGCCGGTAT TGATAGTGAA CGGCTTTCAC CCCATGTGCT ACGCCATGCC TTTGCCACGC ATCTGCTGAA TCACGGTGCC GATTTACGTG TAGTGCAAAT GTTACTGGGC CACAGTGATC TGTCGACAAC TCAGATTTAT ACGCATGTAG CGACTGAACG TTTGAGACAG CTACATCAAC AGCATCATCC ACGCGCTTAA
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Protein sequence | MKQQDNPLIE QFLDALWLER NLAENTLASY RLDLHALVGW LTHHNSDLLR ASPQDLQSFL AERIEGGYKA TSSARLLSAM RRLFQYLYRE KLREDDPTAL LSSPKLPQRL PKDLSEAQVD ALLNSPNVDI PLELRDKAML EVLYATGLRV SELVGLTISD VSLRQGVVRV IGKGNKERLV PLGEEAVYWI ENYMEHGRPW LVNGASLDVL FPSNRSQQMT RQTFWHRIKH YAILAGIDSE RLSPHVLRHA FATHLLNHGA DLRVVQMLLG HSDLSTTQIY THVATERLRQ LHQQHHPRA
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