| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0825 |
|---|
| Symbol | |
|---|
| ID | 5386387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1004615 |
|---|
| End bp | 1005745 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640863789 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001399809 |
|---|
| Protein GI | 153949486 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.330416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAT TACCCCCGCT CAGTCTCTAC ATCCATATCC CTTGGTGCGT CCAGAAATGC
CCTTATTGTG ATTTCAACTC ACATGCGTTG AAAGGCGATG TCCCTCATCA GGAATATGTA
GAGCACGTAC TGGCGGATTT GGATGCTGAC GTGCCTCTGG TGAGTGGCCG TGAAATCAGC
ACAATTTTTA TTGGTGGCGG CACACCCAGC TTGCTGAGTG CAGAGGCCAT GCAGCAACTA
CTTGATGGTG TTCGCGCGCG TTTGCCGGTT GCCAGTGACG CAGAGATCAC CATGGAAGCC
AACCCCGGAG CGGTCGAAGC CGATCGCTTT AGCGGCTATC AGCGAGCGGG TATTAACCGC
ATATCCATTG GCGTCCAGAG CTTTAGCGCA CAGAAATTAA CGCGGCTGGG GCGGATACAT
GGGCCAGATG AAGCAAGGCG GGCAGCAGAG CTGGCAACCT CACTGCAATT ACGTAGCTTT
AATCTGGATT TGATGCACGG TCTGCCTGAT CAAACACTGG AAGAAGCATT GGATGATTTG
CGTCAGGCTA TCGCCTTAAA TCCACCGCAC TTATCTTGGT ATCAGCTGAC TATTGAGCCG
AATACTGGCT TTAGTTCCCG GCCCCCAATC CTGCCCGATG ACGATGCGTT ATGGGATATT
TTCCAGCAAG GTCATCAGCT ACTCAGTGCC GCTGGTTATC TGCAATATGA AACCTCGGCC
TATGCCAAGC CAGGTTACCA ATGCCAGCAT AATCTTAACT ACTGGCGCTT TGGTGATTAT
CTGGGGATTG GCTGTGGGGC GCATGGCAAG ATCACATTTA ACGATGGGCG TATTTTACGG
ACCATAAAAA CCAAACATCC ACGTGGTTTT ATGCAGGGAA AATACTTGGA TAAACAATAT
GAAGTGGCAG CAGTCGACCG GCCTTTTGAG TTCTTTATGA ACCGCTTCCG TTTGTTGGAA
GCTGCCCCTC GGGCTGATTT CTATCACTTC ACCGGGTTAA CTGAGAGTAC TATTCGCCCA
CAGTTAGATG AGGCAATAGC AAAAGAGTAT TTAATCGAAA CAACAGAATA CTGGCAGATT
ACCGAAAAAG GCAAATTGTT CCTTAACTCG CTACTGGAGC TATTTTTATA G
|
|---|
| Protein sequence | MLKLPPLSLY IHIPWCVQKC PYCDFNSHAL KGDVPHQEYV EHVLADLDAD VPLVSGREIS
TIFIGGGTPS LLSAEAMQQL LDGVRARLPV ASDAEITMEA NPGAVEADRF SGYQRAGINR
ISIGVQSFSA QKLTRLGRIH GPDEARRAAE LATSLQLRSF NLDLMHGLPD QTLEEALDDL
RQAIALNPPH LSWYQLTIEP NTGFSSRPPI LPDDDALWDI FQQGHQLLSA AGYLQYETSA
YAKPGYQCQH NLNYWRFGDY LGIGCGAHGK ITFNDGRILR TIKTKHPRGF MQGKYLDKQY
EVAAVDRPFE FFMNRFRLLE AAPRADFYHF TGLTESTIRP QLDEAIAKEY LIETTEYWQI
TEKGKLFLNS LLELFL
|
|---|
| |