| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0733 |
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| Symbol | |
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| ID | 5385459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 896953 |
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| End bp | 899301 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640863701 |
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| Product | type VI secretion system family protein |
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| Protein accession | YP_001399722 |
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| Protein GI | 153947279 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACCA CTCTCCCGAC TCTTCGGTTT GACCATAGCC ACCACAAACT GGTGGTCCGC
GACAGCACCG CCGCCGTTGA TGTGTTGGGC TTTGAAGGCC ACGAAAGCCT GAGCCAGCCG
TTCTGTTACG ACATCCAATT CACCAGCGCC GACAAGGCGA TTGACCCGGC CACCATGCTG
ATGCAGGACG CGTCACTGAC ATTGGCGGCC CCGGTGGCCG AAGCTTTTGG CGTGACGGTT
CAGCAGACCC AGCGAGTGAT CCAAGGGGTG GTCACCGGAT TTAAACGCCT GTCGGCCTCG
AAAGAGGAAT GCCGCTACGA ACTGAGCCTG CAACCGCGCC TGGCCTTGTT GTCGCGCAGC
CATCAGAACG GGATATATCA GGACATGTCG GTGCCGCAGA TTGTGGAAAA AATTCTGCGT
GAGCGCCATG ACATGCGCGG TCAGGATTTT GTCTTCACGC TGGCCCGCGA GTACCCACGC
CGCGAGCAGG TAATGCAATA CGGCGAGGAT GACCTGACCT TTATCCGCCG CCTGCTGGCC
GAGGTGGGGA TCTGGTTTCG TTTTACCGCC GATCCCAAAC TCAATATTGA TGTGGTGGAG
TTTTACGACG ACCAGCGCTT CTATCAGCAA GGACTGACGC TACAGGCGGT GCCGCCTTCG
GGGATGCACG ACAGCGGGAT GGAGTCGGTC TGGGACTTGT CCAGTGCTCA TCAGGTGGTT
GAAAAATCGG TCAGTACCGG CGATTACAAC TACCGCACCG CGACTGCCGA TATGACGGCC
GGGGCAGACA TCACTCGGGG TGATACCACC ACCTACGGCG AAGCTTATCA TTACGCCGAT
AACTACCTGA CCGCAGGCAG TGAAGGGCGC GAGCCGGAAA GTGAAAGCGG GGCCTTTTAT
GCCCGTCTGC GCCATGAACG TTACCTCAAT AATCAGGCGC GCTTCGCCGG GGTGGCCAAT
GCGGCGGCAC TGTCACCGGG TCAGGAACTG AAAGTCACCG GCAACGACGT GCCAGCACAG
TTTGGTAAAG GGGTGATAGT CACCCGCATC ACCAGCCACG CCCGCCGCGA CCGCAGCTAT
GAAGTGCATT TTGAGGCCAT CCCTTACTCC GAAGAGTATT GCTTCCGCCC GATCCTCATC
AACAAGCCAA AAATGGCTGG CACCTTGCCC GCACGGGTCA CCAGCACCAC CGCGAATGAC
ACCTACGGAC ACATCGACAA AGACGGCCGC TACCGTGTCA ATCTGATGTT CGACCGGGAC
AGTTGGGAGC CGGGTTACGA GAGCCTGTGG GTCCGTCAGG CCCGGCCATA TGCGGGTGAC
ACCTACGGCC TGCACCTGCC GCTGCTGGCC GGTACCGAAG TGGCGATTGC ATTTGAAAAC
GGCAACCCGG ACCGGCCGTA TATCGCCTAT GTGCTGCACG ACTCGGCGCA CGGCGACCAT
GTCACCATCA GCAACTACAA ACGCAACGTA CTGCGCACTC CGTCGAACAA CAAACTGCGC
CTGGAGGATG AACGGGGTAA AGAGCACATC AAGCTCAGCA CCGAATATGG CGGCAAAAGC
CAACTGAATC TGGGGCATTT GGTTGATAAC GAGAAACAGC CTCGGGGTGA GGGTTTTGAG
CTGCGCACCG ACAGTTTTGG TGCATTGCGG GCAGAAAGGG GCATTTTTAT CAGTGCCGAC
GGCCAGGCGA AGGCACAGGG GCAGGTGCTG GAGATGCAAC CGGCTATTGG CCTGTTGCAA
GGTGCTCAGG AACAGATGGA GGCCATCTCC GCGGATGCAC AAACCGCCAC CGCCAGTCCG
GCCGACCTGC AGGCACAAAT CAGTTTGTTA CAGCAAAATC TGAACGAGCT GAAACAGGCG
GTGGTATTGC TGAGTGCGCC CAAAGGCATC GCCCTGAGCA GTGGTGAGCA TTTACAACTG
TCGGCCAGCG AAAATCTGAT AGCCACTGCC GGTAAGAATG CGGATATCAG TGTAGGTAAG
AATTTTTTTA TCGGTGTGGG CAACACGCTG AGCGTATTTG TACGCAAGCT GGGGATAAAG
TTGATAGCGA ATCAGGGAGC AATAACGGTA CAGGCCCAGA ATGATCTGAT GGAGTTATTG
GCGCGTAAAG CGATCACGAT CACCAGCACC GAGGATGAGA TAAAAATCAC CGCCAAGAAG
AAGATAACGC TAAATGCAGG CGGCAGTTAT ATCACGCTGG ATGAGAATCG GATCGAGTCA
GGAACGGCGG GGGAATATTT GACCAAAGCA GGGTATTACG GGCGACAGGA AAAGGCAAAT
AAACCAGAAG ATTTTCCGAG TGTTGCCCCG GAAACAACAG AACCCACCAG TCATTTCACT
TTTTCCTGA
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| Protein sequence | MNTTLPTLRF DHSHHKLVVR DSTAAVDVLG FEGHESLSQP FCYDIQFTSA DKAIDPATML
MQDASLTLAA PVAEAFGVTV QQTQRVIQGV VTGFKRLSAS KEECRYELSL QPRLALLSRS
HQNGIYQDMS VPQIVEKILR ERHDMRGQDF VFTLAREYPR REQVMQYGED DLTFIRRLLA
EVGIWFRFTA DPKLNIDVVE FYDDQRFYQQ GLTLQAVPPS GMHDSGMESV WDLSSAHQVV
EKSVSTGDYN YRTATADMTA GADITRGDTT TYGEAYHYAD NYLTAGSEGR EPESESGAFY
ARLRHERYLN NQARFAGVAN AAALSPGQEL KVTGNDVPAQ FGKGVIVTRI TSHARRDRSY
EVHFEAIPYS EEYCFRPILI NKPKMAGTLP ARVTSTTAND TYGHIDKDGR YRVNLMFDRD
SWEPGYESLW VRQARPYAGD TYGLHLPLLA GTEVAIAFEN GNPDRPYIAY VLHDSAHGDH
VTISNYKRNV LRTPSNNKLR LEDERGKEHI KLSTEYGGKS QLNLGHLVDN EKQPRGEGFE
LRTDSFGALR AERGIFISAD GQAKAQGQVL EMQPAIGLLQ GAQEQMEAIS ADAQTATASP
ADLQAQISLL QQNLNELKQA VVLLSAPKGI ALSSGEHLQL SASENLIATA GKNADISVGK
NFFIGVGNTL SVFVRKLGIK LIANQGAITV QAQNDLMELL ARKAITITST EDEIKITAKK
KITLNAGGSY ITLDENRIES GTAGEYLTKA GYYGRQEKAN KPEDFPSVAP ETTEPTSHFT
FS
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