| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0716 |
|---|
| Symbol | |
|---|
| ID | 5386286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 878195 |
|---|
| End bp | 879028 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640863684 |
|---|
| Product | dioxygenase family protein |
|---|
| Protein accession | YP_001399705 |
|---|
| Protein GI | 153947998 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA AAATAATGCC AAAAGTTAAT CGCGAGGGGC GCAGATCATT CTTACAAAAA
TCGATTGCTG TCGTTGCTAC CGGTGTAGTG ACCCGTGCAT TCTCTGCGCC GAACATTACA
TTAGAGAAAG ATACCAAACC TCAACCTGGA ACATGTATTT TATCTGTTGA ACAAATGGCT
GGCCCATATA TTAAAAGCAA TATGCCAATA AGAAGGAACA TAGCAGAAAA TGAAAACGGT
GTGCCTTTAC TCCTTAAAAT AACAGTTATC GATTCAAATT CATGCCGCCC ATTAGAATAT
TATTACGTTG ATATATGGCA ATGTAATGCT CGGGGGCGTT ATTCGGGATG GAGTTATGTT
GACCCTGATA AAGACGCACC AAGTGGAGAA GTTGCGAGTA TCAACAGAAC TGATGAGAAA
AGTTTTTTAA GGGGCTCACA GGTAACTGAT AGTCATGGGC TCGTCAGGTT TACCAGTATC
TACCCTGGGT TTTATGCCGG GCGTGCTGTT CATATTCATT TTGCCATTAA GCCACCAAAA
GCATCTCCTC AGGAGGTCGA TAAATACTCA TTTATTAGTC AGCTTTACTT CCCAGAAGAG
TTCAATAGCG AAATAGAACA ACGGGCTGAA TATTCGCTGA GAAAAATCAA AAGGTTAATA
AATAGTGATG ATGAAATATT TAACGAAGCA AATGGTGAAA ATGCAGTCCT TGCCGTGAGT
AAAATCAATG AAAATGACAT TAATGATGGT GTTTTGGCGG AAATAACGAT AGCAATAAAT
AAAGATATCT TGTCTAAAAG AATTGACCCT AAGGATATTT TAAAGATCAC ATAG
|
|---|
| Protein sequence | MTNKIMPKVN REGRRSFLQK SIAVVATGVV TRAFSAPNIT LEKDTKPQPG TCILSVEQMA
GPYIKSNMPI RRNIAENENG VPLLLKITVI DSNSCRPLEY YYVDIWQCNA RGRYSGWSYV
DPDKDAPSGE VASINRTDEK SFLRGSQVTD SHGLVRFTSI YPGFYAGRAV HIHFAIKPPK
ASPQEVDKYS FISQLYFPEE FNSEIEQRAE YSLRKIKRLI NSDDEIFNEA NGENAVLAVS
KINENDINDG VLAEITIAIN KDILSKRIDP KDILKIT
|
|---|
| |