| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0698 |
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| Symbol | |
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| ID | 5387886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 853063 |
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| End bp | 857541 |
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| Gene Length | 4479 bp |
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| Protein Length | 1492 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640863667 |
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| Product | YD repeat-/RHS repeat-containing protein |
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| Protein accession | YP_001399688 |
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| Protein GI | 153948079 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.632091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATGC CAGCGGTAAA ACATTTTGAT CCGGTCATTG GGCTGGATGT CCATACGGTC
ATTATTCCTC CCTCACCGGT CCCTATCCCT ATTCCCCATC CCCATGTGGG ATTTGTGCTG
GATTTACGCG AGTGCGTTAA CGGCGTTAAA TCGGTGGTCG GTTCAATTGT GTTCAGTTTT
GTCGCTGAGG CTGCTGCTGA TGTGATGGAG GACAACCCTG AATTATTGGC GGCGGGTATG
GCGCTGGTCA GTAAGGCAGG GAGTGCACTG GAGGCCGCGG CGAATAATCC GGTAGTAAAA
ACCGGGCTGG CGTTAAAAGA TGCCAAAGAT CAGCTATCCG GGTTGAAAGC GGGCATTATC
GACACGCTGG GTGGCAATAT TGGCGGCGGC GGGGGGTCTA ACCGACCGGT AAAAGTGAAT
GGCACATTGC GCAGTACCGT CGGGACGCAC ACGTTTCATA TTCCGGGGCT GCATTTTCCC
CTCGGTGCCA TGTTCGCGCC GTTGATCCCC AGCAAAGATT CCGAATCTTT TATGGGCAGC
AAAACCGTTA TGGCCAACGG TGATCCGCTG TCTTATATGG CCCTACCCGC CATGAGTTGC
TGGTTTGTCG GCCTGCCCTC GACGCCGAAA AACGCAGCCC ATACCCAACG CAAGAGCCTG
TCGTTACCCA CCTCCGTCAT GTTGCCGATC CCGATGGGCC GCCCGGTGGT GGTGGGCGGC
ATGCCGGTGC TTAACCTGCT CGCCCTGATG ATGGGGCTGT TCAAGATATT TCGTGGATCT
AAGTTGGCGA AAAAGCTGGC CGAAAAACTG GGATTAAAAT CCGGCTTCCT GAAGTGCACC
ATTTTGGATG CGGAGCCGGT CAACTCGATC ACTGGCGAAG TGGTGGTTGA GCAGAACGAT
TTTGTGGTGG AAGGGCGCTT CCCGCTGGTG TGGGATCGCT ATTATGGCAG CCAGAAAGCG
GTGACCGGTG TCATTGGCCA GCGCTGGCAG TGCCCGGCAG ATATTCGGCT GGAGGTGTTG
GTCGATCAGG GCGAACTCGG CGTGGTGGCC CGCTTCCCGG ATCATGAAAC CGTCTTCTCG
CTGATGCCGA TAGAGCAGGG CTGGGATGAG CGGGTGTATG ACTGGCAGCA GGGGCACGCC
CTGTATCGTT CAGGTAATCA GTTGGTCCTG CGCACCCGCC ACGAGGAAGA GTATTTCTTC
ACGTTGCCCA ATGACTGGGA AAGCACGGTG ATCCCGTTTA CGGCGGCGGA TCGTCTGACG
CTGCCCATTC TGAGAATGGC AGATCGCTAT GGCAATGGCT GGCAATTCAA ACGGCAGGGC
AATTCGCTGT TGCTGGCGTT GATCGAACTG ACACAAGGGT TGCTTTCGGG GCGTGAAGTG
CATGTCATTC AGGATGAAAA CGCCCCTATC AGCGGGATGC TCAACGATTT TGTTCTCGTG
AATAAAACCA ATGGCGAGCG GCGTTTTCTG GTGGGCTACC GCCACGATGG CGAAGGTAAC
CTGATTGCCA CGCTGGATGC GGACAACCAT CCCTACCAGT TTGAATATAT CGCTGACAGC
CAAATGGTGC GCCATACCGA CCGCAACGGG TTGTCGTTTT ACTACCGCTA TCAGCGCCAC
AGCGACGGGC TGAACCGGGT CGAGCACGCC TGGGGTGATG GTGGGCTGTT CGATTACCGT
TTTCATTATG ATCGGGTCTA TCAGGAAACC CAAATCACCG ATTCATTGGG CCACACCACC
TTGCTGCGCT ACGACGAACG GGGGCTGCCG TTTGCCCGCG TCACGCCATT AGGCGGGGTT
TACAGTTATC AATATGATGC ACAGTGCCGG ACCATCGCCG AGATTGACCC AGCGGGCAAT
ACCCACGGCT GGGTGTACGA CCAATATGCC AACCTGACAG AAGAGACCTT TGCCGACCGC
AGCAGCGTGA AAACCGAGTA TGGCGATGAT CATAAACCAG TGCGCATTAC CGATCCCGGC
GGGCGCTTCT GGCGGCAGAG CTGGGATGCA CAGGGCAAGG TGATTTCGCA GACCACGCCG
GGCAATATCG CCACCCATTT TACCTATGAT GACCTTGGGC AACTGGTGAC GGTGGTGGAT
GCCAGCCAGC AGCGCACGGA ACTGGCCTAT GATGCATGGG GTTTTTTGCG GGCCATTACC
GATGCGCGGG GTAACGCGAC GTCATTTAAG CATGATTTTT GCGGTAATCT GCTGAAAAAA
GTGGCGGCCA ATGGCGATAT CACCCGCTAT CAGTACGATA AAAAACAGCG GCTGACGGGC
TGTACGCTAC CCGATGCCAG AACCATCCGC TGTGAATATG ATCGGGAAGA TAATCTACTG
CTCTACAACG AGAACGGCTC ACGTATCACC CGCTTTGGCT ATTTTGGTCA GGGCCGGTTG
CAAAGCCGTA CCGATCCGGA TGGCAGCCTG ACCGAGTACC TGTACGACAC CGAAGAACAG
TTGATTGGGG TGAAAAATCA GCGCGGTGAA ACGTGGCAGC TCAAGCGTAA CGCCGAAGGG
CGGTTAATCG AAGAAGTGGA TTACTGGGGG CAGAGCCGCG GTTATCAGTA CAATGCGGTT
GGGCATTTAA CCGGCAGTCA CGACCCGCTA GGGCAGATAT TGGCGGTCAC CTGCGACAAA
TTAGGGCGCA TCACCGAGAA GAACATTGCG GGTGATGAGC AGGCGTGGGA GCGCTACGAG
TATAACGTTC AGGGCCAGCT TATCGGGGCG GTGAACCCGG CGGTGACGGT GACGCGGCGC
TATAATCAGG ACGGCCAGTT AACGCAGGAA ATTCAGCAGC AACCGCAGGT CAGTGCGACG
GTGGAATATG GCTATAATGC CGCCGGTCAG CAGGCTGAGC AGCGCCATCT GTTGCAATAT
GCCGATGAGG ACGACATTCA GGTACAGCAA CGGATCCGCT ACGGCTACGA TGTGCTGGGG
CAGTGCATCA GCCAGCAGAT CGATGATCAC AGGCCGATGG CGTTCAGCTA CGACAAGATT
GGCCGGTTAA CCGAACAACG GCTAACGCCG AGCCTGTCGC ACCATCTCAG TTACAGCGCT
GCCGGGCAAC TGGCGGGTTA CCAGACACGG CGCAAGGGCA TGGTCTGGAG TGAAACCGAC
TACTTCTATG ATCAGCACGG CAATCTGACG CAGCGGGAGG ACAGCCGGCA GGGCAGTGAG
CGTTATCACT ACGATGTGCT GGGGCAGATT GTGGGCTATC AGGATCCGCT GGGGACGCTG
CATCGCTACC GTTATGATGC CTGCGGTGAC CGGTTCAGCA CGGTGGCTGA CAATGCGGAG
GGCCGGCACA CGCAGCACGA TAATGGCACC GCCTACCAGC TCGACAAGGC GGGGCAGTTG
GTATCGCGCA CCGACCGGTT TAGCCAGTTA GCCCTGCGCT GGAATACTTT TGGTCGGCTG
GCCGGCATCA AAAATGAGCA CCATGATCAC GCTTATACCT ACGATGCGCT GGGGCGCCGG
GTGGGCAAAC GGCACCTTCA ACGGCCGACC AAACTGCTTG ATGGGCTGCG GGTGATCGAC
AAAGAGACCC CCTCGCGCGG TGAACCGGTG TGGCAGGATG AAACCTGGTT TATGTGGGAC
GGTGACGTGA TGGTGGGCGA GTTGCAGCGT GAAGTTGCCC CCCGGGTGGT GACGCCTGAA
ACCTGGGACA AACCGGATGG TATCGTCTAC AGCGCTCAGT TTTACGTGTA TCAGCCAGAC
AGCTTCGAAC CCCGCGCCAT GCAGCGTTAT CAACAGGTTG CGGAAGCTGA AGACGGCGAA
ATCGCGCCAT TAGGCGAAGA GCAGATTTAT TTCTACCAGA ATGACCCGAA CGGTATGCCG
ATCCGCCTGC AGGATGGCGA AGGCGAAGTG GTATGGGAAG CACAGTTCAC CCCGTTCGGG
CAACTGAGTG TCACGGGTAC CAGCCAACTG CGCCAGCCGC TGCGCATGCA GGGCCAATAT
TACGACACGG AAAGCGGTTT ACATTATAAC CGCTACCGTT ATTATGATCC GGCCTGCGGT
GTCTTTATCA GCCAGGACCC AATAGGGTTA AAAGGCGGAT TAAATCCGTA CCAGTTTGCA
GTGAATACAC TGGGATGGGT GGATCCGCTG GGGTTAGCTA AAAAAACGAA TGAGGCTGGG
GCATACTCTG AAGTAGGTGG TCATCATGTT CATGCACAAG CTGGATTTAA AAATGAGCCT
AATTACGATA AGGGTACCGC ATTTGCTATT GGTCAGGATT ACATGAAAGA AAAAGGTTTG
GATCACCAAT CTATGACCAA TTCTCAACGG CAAGGATTTA AAGAATTAAA TGAAAGTGGT
AGACCAAATA CTTTGGCTGA ACATGACAAA ATTGCTAAAG ATGCTTTAAT AGCTGGGGGG
GCAACAGAAG AAGAAGCTAA TGATTTAGTG AAAAAGTCCA AGGATAATTT GAAATGTCAA
AATGTTTCTA AACCCAGCAA TATCCCTTGG TATAGTTAA
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| Protein sequence | MAMPAVKHFD PVIGLDVHTV IIPPSPVPIP IPHPHVGFVL DLRECVNGVK SVVGSIVFSF
VAEAAADVME DNPELLAAGM ALVSKAGSAL EAAANNPVVK TGLALKDAKD QLSGLKAGII
DTLGGNIGGG GGSNRPVKVN GTLRSTVGTH TFHIPGLHFP LGAMFAPLIP SKDSESFMGS
KTVMANGDPL SYMALPAMSC WFVGLPSTPK NAAHTQRKSL SLPTSVMLPI PMGRPVVVGG
MPVLNLLALM MGLFKIFRGS KLAKKLAEKL GLKSGFLKCT ILDAEPVNSI TGEVVVEQND
FVVEGRFPLV WDRYYGSQKA VTGVIGQRWQ CPADIRLEVL VDQGELGVVA RFPDHETVFS
LMPIEQGWDE RVYDWQQGHA LYRSGNQLVL RTRHEEEYFF TLPNDWESTV IPFTAADRLT
LPILRMADRY GNGWQFKRQG NSLLLALIEL TQGLLSGREV HVIQDENAPI SGMLNDFVLV
NKTNGERRFL VGYRHDGEGN LIATLDADNH PYQFEYIADS QMVRHTDRNG LSFYYRYQRH
SDGLNRVEHA WGDGGLFDYR FHYDRVYQET QITDSLGHTT LLRYDERGLP FARVTPLGGV
YSYQYDAQCR TIAEIDPAGN THGWVYDQYA NLTEETFADR SSVKTEYGDD HKPVRITDPG
GRFWRQSWDA QGKVISQTTP GNIATHFTYD DLGQLVTVVD ASQQRTELAY DAWGFLRAIT
DARGNATSFK HDFCGNLLKK VAANGDITRY QYDKKQRLTG CTLPDARTIR CEYDREDNLL
LYNENGSRIT RFGYFGQGRL QSRTDPDGSL TEYLYDTEEQ LIGVKNQRGE TWQLKRNAEG
RLIEEVDYWG QSRGYQYNAV GHLTGSHDPL GQILAVTCDK LGRITEKNIA GDEQAWERYE
YNVQGQLIGA VNPAVTVTRR YNQDGQLTQE IQQQPQVSAT VEYGYNAAGQ QAEQRHLLQY
ADEDDIQVQQ RIRYGYDVLG QCISQQIDDH RPMAFSYDKI GRLTEQRLTP SLSHHLSYSA
AGQLAGYQTR RKGMVWSETD YFYDQHGNLT QREDSRQGSE RYHYDVLGQI VGYQDPLGTL
HRYRYDACGD RFSTVADNAE GRHTQHDNGT AYQLDKAGQL VSRTDRFSQL ALRWNTFGRL
AGIKNEHHDH AYTYDALGRR VGKRHLQRPT KLLDGLRVID KETPSRGEPV WQDETWFMWD
GDVMVGELQR EVAPRVVTPE TWDKPDGIVY SAQFYVYQPD SFEPRAMQRY QQVAEAEDGE
IAPLGEEQIY FYQNDPNGMP IRLQDGEGEV VWEAQFTPFG QLSVTGTSQL RQPLRMQGQY
YDTESGLHYN RYRYYDPACG VFISQDPIGL KGGLNPYQFA VNTLGWVDPL GLAKKTNEAG
AYSEVGGHHV HAQAGFKNEP NYDKGTAFAI GQDYMKEKGL DHQSMTNSQR QGFKELNESG
RPNTLAEHDK IAKDALIAGG ATEEEANDLV KKSKDNLKCQ NVSKPSNIPW YS
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