| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0695 |
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| Symbol | |
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| ID | 5386110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 845114 |
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| End bp | 848893 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640863664 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001399685 |
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| Protein GI | 153947399 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.931243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATTCA GAGCGTTTAT TTCTAGCCAT GCCGGGCGTC ACCCCCTCTT CAACTGCGCT
CCTGTCGCCG TGATTAATCC CATTACATTG GCGATTATTG TTGCGTTCTC CACCCTTACC
TTGCCACAAA CCGCACGGGC GACGTGCACC AGCTCCGGGG TGGGAACCTA TGTTTGCGAA
GGTGAAAATA ACGCGGGGAT ATCCCTGAAC GGAACGGATA TCGCGGTTGA GACCCTGCCC
GGTTTTGGCA TCACAGAGCC TGGAGATATA GATCCTGCGC TCTCATTAAT CGGCTCTGGT
GCCATCAGTT ACCTCGACAC CAACAGTTCT GTGCTTGATA CCGCTGGTGC CTATTCTTTG
TTTATCCAGA ATGATACGTC GATGATTGGG CAATCGACAT CCACTAACGT TCAGGCCAAC
GGTTCAATTG GCAGTGGCGT TTACATTAAC AACCAGAGCA GTGACGATTC GACCATACGG
GTAGACCTCT CCGGCATGTT ATCCAGCGGC CTAAATGGCA CTCCTGCCCT TGCAATCTAC
TCATTGGCAG ACAATGATTC AACTATCACT CTGAACATCC ATGCTATTTC AGGTATTGCG
GGTATCCAAA GCGATAATAA TTCACTGTAC GGAACGGCCA TCACCAATGT TGATATTGCC
AACGATATCA ACGTCGAATA TTCAGGAGCC TCGATCCGGA ATTATTCCAA TAGTGGCACC
AGTATCCTTA ATTTCAATTC AAAGAGTATC AGGACAGACC TCGACGCCTT GGATATTAAT
AATAGCAGTT ATTCAGGGGA GGTGATGACC GATATCAATA TCGATGGCGA TATCAGCTCA
GCCAATAGTC AAGCTGCCAG GATTTACAAT TATACCAATG GCGGTCTTTC GAGCCTTAGA
TTTCGCGCCA ATAATGTCAC GGGTGAATAT GCTGGCCTTT ATATCGATAA TAGCAGCCAG
AATGGCGCTG TAACCGATAT TATATTGACG GGTGATCTTA CGGCTACTTC AGGATCTGCT
CTACACGCCA ATACCTTCTC GGAGGAGGGG AACATCGAGA CCGCTATCAA GTTGAATAAC
GTTTATTCTC TGTATAACGC ACTCAATATT AACGGCCATA ACCAAACTGG AAATATACTG
CTTGATCTTG ATGTCTCAGG CACGATTACT TCAGAAAACG GTACCGGGAT TAAAGTGATG
GGAACGACTT TTGAAGGCAA TTCCACTATA CTCATCAATG TGAATAACAT TACTTCCAGC
AGTCAATCGC TTGATATCAA CAATTACAGT TCTTCGGGTT CAGCTCTTTC TGCCATTACT
GCAACCGGGC ATCTCGCTAC GGAATGGGGA CAAGGGGTAA CGTTCCAAAC CTATTCCTCT
CTGGGGGATG CTACCACGCT CATCCACGTC AATGACATTA CTTCAATGGG GAATGGGATA
TATAGCCTTA CTGAGGCTAG CCGGGGTACA GCAACCACCG ACGTCACCGT GACGGGCCAG
ATTAACGTCA GTGATGGGGA GGGTATTACC CTTAATATGC AGACCATTGA CGGCAATACC
TTGGTCAACA TTGACGTCAA TAATATCGCC AGTGAATACG ATGCTATCCA CCTCTATAAC
AATAACTACA CCACAGGCGT GGATGATGGC ACAGGCGTAG ACAACGGCAC CTCGACCATT
GATTTGATCA CCCGGGGTGC GCTGGTTTCA CAGCAGGGCT ACGGGATTAA TATCGAAACC
AATACCGCAG ACACCTATGT CACCGTGGGC GGTTTGGTGC ACGGCGGCAA CGGTACCGCA
ATTGGTCTTC ATCGGCTCGA AAATGTTCAA ACATCAGCTA CGTTAGAGCT GCAATCTGGC
TATGCCCTTG AAGGGGCGAC ACAGTCACTG GTATTCACTG GCAATTACGT GGATATCAAT
GATGCCGCGT TGGATCTGGC AAACAGCCAT CTGGTGCTGG GCGGAGCAGG GGACGCCGCT
TTCGATCTCG GCCGTATTGA TAACCGTGAA GAGGCCATTC TGGATGGTGA CCCGAACCGG
ATCACCGGCT TCGGTACCCT GACCAAAACC AACAACAGCA TCTGGACGTT AACCGGCACC
AATATGGCCG ACGGTGACAC CAATGCCTTC CTGTCGGCCA ATATCGCCGG GGGGATTTTG
GTGCTGGATA ACGCCACGCT GGGCCTGACA CCTACCGCCG GGGCACTGAC TGGCCCCACA
GTAAACCGCC TCAGTGCGGC CGATATCGCC GCTGACCCGA CGTTGGTGGC TACCGAAACC
GGTGCATTAA CCCTGAGTGA AGGCGGCGCG CTGTCCTCGC TCGGTGACTC GGTCCTGAGT
GGTAACCTCA TCAGCGCTGG CGGGATCCTG CTGTCAAACA CCTATACCGG CGGCAATGGT
GCCGCTACCG ATGATCGGCT GACCGTGACC GGGACTTATT TGGGTGAAAA TAACGGTTCC
GGTGAAGGGG CCTGGCTGGC ACTCGATACG GTGCTGGGGG ATGACGATTC TGCCACCGAC
CGATTAGTGA TCAACGGCGA TGCCACCGGC ACCACCTCGG TCCGGGTGAA CAATGCGGGC
GGTCTGGGCG ATAAAACCCT CAATGGCATC AACCTGATCA CCGTGGACGG TCTGGCGCAG
GATGACACCT TCCTGCTGGC CGGGGATTAT GTCACCACGG ATGGCTATCA GGCGGTGGTG
GCCGGGGCGT ATGCCTACAC CTTACAGGCC GACGGGGAAG CCGCTACCGC AGGCCGCAAC
TGGTATCTCT CGTCAGAACT GATGCTAACC GAGGGGGTAC GCTATCAGGT GGGCGTACCG
CTGTATGAAC AATATCCGCA GGTGCTGGCC GCCCTGAATA CCCTGCCGAC GCTGCAACAG
CGTGTCGGTA ACCGTTACGG GGCACCGGGC GCACTGGCAG ACCTGAACTT TGACGATAAT
CAATGGGCCT GGGGCCGTAT TGAAGGGAGC CACCAGGTCA CCGACCCGGC CCGATCCACC
AGCGGTTCAC AGCGTGAGAT TGATGTGTGG AAGTTGCAGA CCGGCATTGA TGTGCCGTTG
TATCAGAGCC AGGGCGGTTC ACTGCTGACC GGCGGGGTGA ACTTCACCTA CGGAAAAGCC
AAAGCGGATA TCCACTCATT CTTTGGTGAT GGCCGCATCA ACAGCGCAGG TTACGGTCTT
GGCACCAGCC TGACCTGGTA TGGCAATAAC GGCGTGTATG TGGATGGCCA GTTGCAGACG
ATGTGGTTTG ACAGCGACCT GAGCTCCCGT ACCGCAGGGC ATGCGGTGGC CAGCGGTAAC
AATGGTCGCG GGTATACCTC AGCGATAGAA GCCGGTAAAG GTTACGCACT GGGTAACGGG
TTATCGCTGA CCCCGCAGAT GCAGGTGACC TACTCGCGGG TCGATTTCGA TACCTTCCGC
GATCCGTTTG ATAGCGAAGT CTCGCTGCAA GAGGGTGACA GCCTGCGGGG CCGCCTCGGT
GTCTCACTGG ATAAGGAAAC GACCTGGAGT GCGAAAGACG GCACCACCCG CCGCTCACAC
ATTTACAGTC ATCTCGATCT GCACAATGAG TTCCTTAACG GCAGTAAAGT GCAGGTCTCG
GGGGTGGAGT TCGCCACCCG GGATGAGCGT CAGTCGGTGG GGTTAGGCGC GGGTGGTACG
TATGAATGGC AGAATGGTCG CTACGCGGTT TACGGCAATG TCAATCTGTT GGGGGCTACG
CGGAATGTCA GTGACAATTA TGCCGTCGGC GGCACGATAG GTGCACGGGT GAGCTGGTAA
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| Protein sequence | MPFRAFISSH AGRHPLFNCA PVAVINPITL AIIVAFSTLT LPQTARATCT SSGVGTYVCE
GENNAGISLN GTDIAVETLP GFGITEPGDI DPALSLIGSG AISYLDTNSS VLDTAGAYSL
FIQNDTSMIG QSTSTNVQAN GSIGSGVYIN NQSSDDSTIR VDLSGMLSSG LNGTPALAIY
SLADNDSTIT LNIHAISGIA GIQSDNNSLY GTAITNVDIA NDINVEYSGA SIRNYSNSGT
SILNFNSKSI RTDLDALDIN NSSYSGEVMT DINIDGDISS ANSQAARIYN YTNGGLSSLR
FRANNVTGEY AGLYIDNSSQ NGAVTDIILT GDLTATSGSA LHANTFSEEG NIETAIKLNN
VYSLYNALNI NGHNQTGNIL LDLDVSGTIT SENGTGIKVM GTTFEGNSTI LINVNNITSS
SQSLDINNYS SSGSALSAIT ATGHLATEWG QGVTFQTYSS LGDATTLIHV NDITSMGNGI
YSLTEASRGT ATTDVTVTGQ INVSDGEGIT LNMQTIDGNT LVNIDVNNIA SEYDAIHLYN
NNYTTGVDDG TGVDNGTSTI DLITRGALVS QQGYGINIET NTADTYVTVG GLVHGGNGTA
IGLHRLENVQ TSATLELQSG YALEGATQSL VFTGNYVDIN DAALDLANSH LVLGGAGDAA
FDLGRIDNRE EAILDGDPNR ITGFGTLTKT NNSIWTLTGT NMADGDTNAF LSANIAGGIL
VLDNATLGLT PTAGALTGPT VNRLSAADIA ADPTLVATET GALTLSEGGA LSSLGDSVLS
GNLISAGGIL LSNTYTGGNG AATDDRLTVT GTYLGENNGS GEGAWLALDT VLGDDDSATD
RLVINGDATG TTSVRVNNAG GLGDKTLNGI NLITVDGLAQ DDTFLLAGDY VTTDGYQAVV
AGAYAYTLQA DGEAATAGRN WYLSSELMLT EGVRYQVGVP LYEQYPQVLA ALNTLPTLQQ
RVGNRYGAPG ALADLNFDDN QWAWGRIEGS HQVTDPARST SGSQREIDVW KLQTGIDVPL
YQSQGGSLLT GGVNFTYGKA KADIHSFFGD GRINSAGYGL GTSLTWYGNN GVYVDGQLQT
MWFDSDLSSR TAGHAVASGN NGRGYTSAIE AGKGYALGNG LSLTPQMQVT YSRVDFDTFR
DPFDSEVSLQ EGDSLRGRLG VSLDKETTWS AKDGTTRRSH IYSHLDLHNE FLNGSKVQVS
GVEFATRDER QSVGLGAGGT YEWQNGRYAV YGNVNLLGAT RNVSDNYAVG GTIGARVSW
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