Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0676 |
Symbol | yopM |
ID | 5386024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 800106 |
End bp | 800960 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640863647 |
Product | outer membrane protein YopM |
Protein accession | YP_001399668 |
Protein GI | 153948203 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 52 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTAT CAAATATAAC CTCGCACATG TCAATGTCGA ACATAGGACC AGACCGTGAA ATCCATTCTG ACCGGGCAGC AGCAACAGCC TTAACTTCGG CTGACTATCA TGCAATATGG GAAAAGTGGG CAAGCGAGGC GATAACGGGT GCTGATGAAC AGCGGGGCCT GGCAGTGGCG AGAATGAAAG AGTGCCTGGA AAACAGTGCC GATAACCTCG AACTCTATGG GCTTGATTTG ACCTCATTAC CAGACATTCT GCCGCCGTGT AACGAGCTGG ATCTCATGGG CAATAATTTA ACTGAGTTGT CAGCAACACT GCCAGACAAC CTGCAAAAAC TGAATGCTTC TTTTAATCAA CTGCGTACAT TACCGAATAC ATTACCGGCC TCGCTGTTAT CTCTAAATGT GTACAGAAAT GAACTGGAAC GGCTCCCTGA GCCGCTACCT GAAGGGCTGA AAGAATTAGA CGTTGGTAAT AATGAGTCAC TGCAACTCCC AAACCGCTGG CCCTCGGTTC TGGAGTCTCT TGGTATTGCA AACTGTAACT TAGCTGAACT GCCTACACTG CCGAACAGTT TGAAAAAACT GGAGGCGTAT GGTAATCAAC TGCGCACATT GCCCGAGACA TTGCCAATAT CGCTGTTAAG TTTAAATGTA ACCGCTAATC AACTCACACA ACTCCCCGAA ACATTGCCCG CCCTTCTGTC ATCTTTACTG ATATCGAACA ATAGGCTCAC AGCACTACCG GAAAATTTAC CTCGTAGCTT AAGGTGTATC AGCGCTGAAT ATAATCAATT ACCCCAACTT TCCGACCTGG CCCGTCTGCA CCCAAATTGT GAAATTATCT TATAA
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Protein sequence | MNLSNITSHM SMSNIGPDRE IHSDRAAATA LTSADYHAIW EKWASEAITG ADEQRGLAVA RMKECLENSA DNLELYGLDL TSLPDILPPC NELDLMGNNL TELSATLPDN LQKLNASFNQ LRTLPNTLPA SLLSLNVYRN ELERLPEPLP EGLKELDVGN NESLQLPNRW PSVLESLGIA NCNLAELPTL PNSLKKLEAY GNQLRTLPET LPISLLSLNV TANQLTQLPE TLPALLSSLL ISNNRLTALP ENLPRSLRCI SAEYNQLPQL SDLARLHPNC EIIL
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