Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0666 |
Symbol | |
ID | 5387694 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 773496 |
End bp | 776063 |
Gene Length | 2568 bp |
Protein Length | 855 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640863637 |
Product | sensory box-containing diguanylate cyclase |
Protein accession | YP_001399658 |
Protein GI | 153950724 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGATG CCAGACCGAC AAAATCAACG TCACGGATAA CAGGGGAAAA TGTTTTTTTT GCAAAACGGA TACTGCAAAC CATGGCTTTG CTGGTTGGGA TGACGATCAT TATTGCTGCT GTGGGTATTA TTTATATCGC ATCACAATTA AATGAACAGG CAAGTGTACA AAGCCGCTTC CTGATCGAAA AAGCGTGGAA AATGCAGCAG GACTCACTCA AAACCAGAAT AAAAGATAAT GCATTTTGGG GTGATGCTTA CCAGCACCTG CATGTAAAAA TGGATACCGA CTGGGCCTTT ATTAGCCAAA ATATGGGGCC TTCCCTGTAT AAAGATTTTA GTCTTGAAGG TGTCTTTGTC ATTGATGGAC AGGGAAAGAC CCGTTATTCA GTGATCAATG GGCAATTAGT CAATACCGAC CTACAGAGTT GGCTGCATAA AGATATTACG CCGCTAATCG ATATCGCACG TCAGCGGGCT GAAAAACCAT ATATTGCTGT CGATACTCTC GAAATAGCGG GTCAGCCAGC ATTAATTGCC GCCGCCGCAT TAACCCCCGG AGAGGATCCG CGTGTCCAAT GGGTTGCGGG CCCCCCTTCC GTGTTGGTAT TTATCAATAT CCTGACACCG GCTGAACTGA GCGCATTGGG GGAGAATTAT GGTATCCACA ACCTGCGTAT GCCGAGAAAT AGCCAGGATG CCACATCCAA ACCTTCGCTG GTCATCGCCT CATCAGATAA CAGTACCCTG ACCTTACATT GGGATCAGGA GATGCCAGGA ACCCCATTAT TAAATATCTT GCTACCGTTA CTGGCGTTGG TTGCCCTAAT TATTGGGTTA ACCGCCTGGC TGGTTATACG CCGCGCCATC TCGGGGGCGA AAGCCACCGA TAGGAGTCGG GCCGCGTTGG CTGCCAGCGA AGAACGTTTC CGCCATGTGG CAGAATCGGC CAGTGATTGG TTATGGGAGA CCGACGCAGA GTTGCAGGTG ACTTATCTCT CACCACGCTT CTTAATCATC AGCGGATGGA GTGTTGATCA CTGGCTGGGG CGTCATCTTG ATTCGCTGTT AAATTGCGAC ATTACCTCGC TACGGACTTG GTTGCAGCAT ACCCATTTAA CTGATTCACG TAACGAACTG CAATGCACTT ATTTCTCAGC TAAAGGTAGC AAACGGGTCT GCCGAATCCA TGCCAAGCCG ATCATTCAGC AGGGTGAAAT CGTCGGTTTT CGTGGTACCG CCTCAGATCT TACGCGTGAA ATCGAAGCTG AGAAACGTAT TGAGCACCTT TCCCTACATG ATGCGCTAAC CGGTTTACCT AACCGGACGT TGATGACCGA GTTCTTGGAA AATAAGCTGC ACAATCTGGC CGCCGTAGAG CATCCCTTGG TGATCCTTAA TGTTAATTTG GATAAGTTTA AGCCCGTCAA TGACAACTTT GGTCATGTCA CTGGCGATCA AGTGCTTTAT CAGGTTGCTG AGCGCCTGCG TTCCTGCTTG CGTGACAAGG ATTTGGTCTC CCGCCAAGGC GGAGATGAGT TTATTTTGAT TATTTCCGAT CTCTCCTCTT CCTACGAGAT CGAACTGTTG TGTGCCAGAG TGATCACCCG CATCCAAATG CCGTATGTGA TCAATGAGCA AGAGATTTAT CTTGGGGCCA GTATTGGTAT TACGTTGGCA CCACAAGATT CAATGCAAGC AGAGGAATTG CTGCGATTCG CTGATATCGC GATGTGTGAA GCCAAAAACA GTGCCCGTAA CCGGTGGCGT TTTTACGCCA GTGAAATGAA TGACCGCCTG ATGCAACGAA TTGAACTTGA AAAGTTTTTA CGTTTAGCGG TTAAAAAAAG CGAATTCTGT CTTTACTATC AACCTCGCTA CCGTACTGAC GACATGCAAC TGATAGGGGC AGAGGCGTTG GTACGCTGGA ATCACCCCGT TCTGGGGTTG TTGATGCCAG ATCAATTTAT TGCGTTAGCG GAGGAGACCG GGCTTATCAC CGCCATCAGT GATTGGACCC TATTACAAGC TTGCCAAGAC GCGATGACCT GGCCAACCTC ATTGATTGTC TCGGTTAATA TCTCGGCGAT TGAATTCAGG GGCCAGTGTC TTATCGAGCG AGTCCGGCAA GCCTTGTTAG TAACCGGTTT GCCCAGCCAC CGGCTAGAGT TGGAGATCAC CGAGCGGATC ATGATTGAAG ATGCAGATGG CGCACTGAAG ATCATGACTG CGCTAAAAAC CTTGGGTATA CGCCTGTCGA TAGATGATTT TGGTACAGGA TATTCTTCAC TGAATTATCT GCACCGTTTT CCTTTTGACG GGTTGAAAAT TGATAAAAGT TTTATTGATA AACTCACCGA GTCACATGAA GGGCAATCCA TTGTCGAAGG TATTATTAAC CTGGGCCATG CTATTTCAAT GACCGTGATC GCCGAAGGCG TGGAAACGGC CGAGCAACTC ACCTATTTGC AGTCACTCCA TTGTGATGAG GTGCAGGGAT ATTTTCTTGC CAAACCTATG CCGGTAGAGG CGTTGTCTTT GGTTTTTTCT GAGGATTTAT CGGTGTGA
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Protein sequence | MTDARPTKST SRITGENVFF AKRILQTMAL LVGMTIIIAA VGIIYIASQL NEQASVQSRF LIEKAWKMQQ DSLKTRIKDN AFWGDAYQHL HVKMDTDWAF ISQNMGPSLY KDFSLEGVFV IDGQGKTRYS VINGQLVNTD LQSWLHKDIT PLIDIARQRA EKPYIAVDTL EIAGQPALIA AAALTPGEDP RVQWVAGPPS VLVFINILTP AELSALGENY GIHNLRMPRN SQDATSKPSL VIASSDNSTL TLHWDQEMPG TPLLNILLPL LALVALIIGL TAWLVIRRAI SGAKATDRSR AALAASEERF RHVAESASDW LWETDAELQV TYLSPRFLII SGWSVDHWLG RHLDSLLNCD ITSLRTWLQH THLTDSRNEL QCTYFSAKGS KRVCRIHAKP IIQQGEIVGF RGTASDLTRE IEAEKRIEHL SLHDALTGLP NRTLMTEFLE NKLHNLAAVE HPLVILNVNL DKFKPVNDNF GHVTGDQVLY QVAERLRSCL RDKDLVSRQG GDEFILIISD LSSSYEIELL CARVITRIQM PYVINEQEIY LGASIGITLA PQDSMQAEEL LRFADIAMCE AKNSARNRWR FYASEMNDRL MQRIELEKFL RLAVKKSEFC LYYQPRYRTD DMQLIGAEAL VRWNHPVLGL LMPDQFIALA EETGLITAIS DWTLLQACQD AMTWPTSLIV SVNISAIEFR GQCLIERVRQ ALLVTGLPSH RLELEITERI MIEDADGALK IMTALKTLGI RLSIDDFGTG YSSLNYLHRF PFDGLKIDKS FIDKLTESHE GQSIVEGIIN LGHAISMTVI AEGVETAEQL TYLQSLHCDE VQGYFLAKPM PVEALSLVFS EDLSV
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