Gene YpsIP31758_0666 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0666 
Symbol 
ID5387694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp773496 
End bp776063 
Gene Length2568 bp 
Protein Length855 aa 
Translation table11 
GC content48% 
IMG OID640863637 
Productsensory box-containing diguanylate cyclase 
Protein accessionYP_001399658 
Protein GI153950724 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGATG CCAGACCGAC AAAATCAACG TCACGGATAA CAGGGGAAAA TGTTTTTTTT 
GCAAAACGGA TACTGCAAAC CATGGCTTTG CTGGTTGGGA TGACGATCAT TATTGCTGCT
GTGGGTATTA TTTATATCGC ATCACAATTA AATGAACAGG CAAGTGTACA AAGCCGCTTC
CTGATCGAAA AAGCGTGGAA AATGCAGCAG GACTCACTCA AAACCAGAAT AAAAGATAAT
GCATTTTGGG GTGATGCTTA CCAGCACCTG CATGTAAAAA TGGATACCGA CTGGGCCTTT
ATTAGCCAAA ATATGGGGCC TTCCCTGTAT AAAGATTTTA GTCTTGAAGG TGTCTTTGTC
ATTGATGGAC AGGGAAAGAC CCGTTATTCA GTGATCAATG GGCAATTAGT CAATACCGAC
CTACAGAGTT GGCTGCATAA AGATATTACG CCGCTAATCG ATATCGCACG TCAGCGGGCT
GAAAAACCAT ATATTGCTGT CGATACTCTC GAAATAGCGG GTCAGCCAGC ATTAATTGCC
GCCGCCGCAT TAACCCCCGG AGAGGATCCG CGTGTCCAAT GGGTTGCGGG CCCCCCTTCC
GTGTTGGTAT TTATCAATAT CCTGACACCG GCTGAACTGA GCGCATTGGG GGAGAATTAT
GGTATCCACA ACCTGCGTAT GCCGAGAAAT AGCCAGGATG CCACATCCAA ACCTTCGCTG
GTCATCGCCT CATCAGATAA CAGTACCCTG ACCTTACATT GGGATCAGGA GATGCCAGGA
ACCCCATTAT TAAATATCTT GCTACCGTTA CTGGCGTTGG TTGCCCTAAT TATTGGGTTA
ACCGCCTGGC TGGTTATACG CCGCGCCATC TCGGGGGCGA AAGCCACCGA TAGGAGTCGG
GCCGCGTTGG CTGCCAGCGA AGAACGTTTC CGCCATGTGG CAGAATCGGC CAGTGATTGG
TTATGGGAGA CCGACGCAGA GTTGCAGGTG ACTTATCTCT CACCACGCTT CTTAATCATC
AGCGGATGGA GTGTTGATCA CTGGCTGGGG CGTCATCTTG ATTCGCTGTT AAATTGCGAC
ATTACCTCGC TACGGACTTG GTTGCAGCAT ACCCATTTAA CTGATTCACG TAACGAACTG
CAATGCACTT ATTTCTCAGC TAAAGGTAGC AAACGGGTCT GCCGAATCCA TGCCAAGCCG
ATCATTCAGC AGGGTGAAAT CGTCGGTTTT CGTGGTACCG CCTCAGATCT TACGCGTGAA
ATCGAAGCTG AGAAACGTAT TGAGCACCTT TCCCTACATG ATGCGCTAAC CGGTTTACCT
AACCGGACGT TGATGACCGA GTTCTTGGAA AATAAGCTGC ACAATCTGGC CGCCGTAGAG
CATCCCTTGG TGATCCTTAA TGTTAATTTG GATAAGTTTA AGCCCGTCAA TGACAACTTT
GGTCATGTCA CTGGCGATCA AGTGCTTTAT CAGGTTGCTG AGCGCCTGCG TTCCTGCTTG
CGTGACAAGG ATTTGGTCTC CCGCCAAGGC GGAGATGAGT TTATTTTGAT TATTTCCGAT
CTCTCCTCTT CCTACGAGAT CGAACTGTTG TGTGCCAGAG TGATCACCCG CATCCAAATG
CCGTATGTGA TCAATGAGCA AGAGATTTAT CTTGGGGCCA GTATTGGTAT TACGTTGGCA
CCACAAGATT CAATGCAAGC AGAGGAATTG CTGCGATTCG CTGATATCGC GATGTGTGAA
GCCAAAAACA GTGCCCGTAA CCGGTGGCGT TTTTACGCCA GTGAAATGAA TGACCGCCTG
ATGCAACGAA TTGAACTTGA AAAGTTTTTA CGTTTAGCGG TTAAAAAAAG CGAATTCTGT
CTTTACTATC AACCTCGCTA CCGTACTGAC GACATGCAAC TGATAGGGGC AGAGGCGTTG
GTACGCTGGA ATCACCCCGT TCTGGGGTTG TTGATGCCAG ATCAATTTAT TGCGTTAGCG
GAGGAGACCG GGCTTATCAC CGCCATCAGT GATTGGACCC TATTACAAGC TTGCCAAGAC
GCGATGACCT GGCCAACCTC ATTGATTGTC TCGGTTAATA TCTCGGCGAT TGAATTCAGG
GGCCAGTGTC TTATCGAGCG AGTCCGGCAA GCCTTGTTAG TAACCGGTTT GCCCAGCCAC
CGGCTAGAGT TGGAGATCAC CGAGCGGATC ATGATTGAAG ATGCAGATGG CGCACTGAAG
ATCATGACTG CGCTAAAAAC CTTGGGTATA CGCCTGTCGA TAGATGATTT TGGTACAGGA
TATTCTTCAC TGAATTATCT GCACCGTTTT CCTTTTGACG GGTTGAAAAT TGATAAAAGT
TTTATTGATA AACTCACCGA GTCACATGAA GGGCAATCCA TTGTCGAAGG TATTATTAAC
CTGGGCCATG CTATTTCAAT GACCGTGATC GCCGAAGGCG TGGAAACGGC CGAGCAACTC
ACCTATTTGC AGTCACTCCA TTGTGATGAG GTGCAGGGAT ATTTTCTTGC CAAACCTATG
CCGGTAGAGG CGTTGTCTTT GGTTTTTTCT GAGGATTTAT CGGTGTGA
 
Protein sequence
MTDARPTKST SRITGENVFF AKRILQTMAL LVGMTIIIAA VGIIYIASQL NEQASVQSRF 
LIEKAWKMQQ DSLKTRIKDN AFWGDAYQHL HVKMDTDWAF ISQNMGPSLY KDFSLEGVFV
IDGQGKTRYS VINGQLVNTD LQSWLHKDIT PLIDIARQRA EKPYIAVDTL EIAGQPALIA
AAALTPGEDP RVQWVAGPPS VLVFINILTP AELSALGENY GIHNLRMPRN SQDATSKPSL
VIASSDNSTL TLHWDQEMPG TPLLNILLPL LALVALIIGL TAWLVIRRAI SGAKATDRSR
AALAASEERF RHVAESASDW LWETDAELQV TYLSPRFLII SGWSVDHWLG RHLDSLLNCD
ITSLRTWLQH THLTDSRNEL QCTYFSAKGS KRVCRIHAKP IIQQGEIVGF RGTASDLTRE
IEAEKRIEHL SLHDALTGLP NRTLMTEFLE NKLHNLAAVE HPLVILNVNL DKFKPVNDNF
GHVTGDQVLY QVAERLRSCL RDKDLVSRQG GDEFILIISD LSSSYEIELL CARVITRIQM
PYVINEQEIY LGASIGITLA PQDSMQAEEL LRFADIAMCE AKNSARNRWR FYASEMNDRL
MQRIELEKFL RLAVKKSEFC LYYQPRYRTD DMQLIGAEAL VRWNHPVLGL LMPDQFIALA
EETGLITAIS DWTLLQACQD AMTWPTSLIV SVNISAIEFR GQCLIERVRQ ALLVTGLPSH
RLELEITERI MIEDADGALK IMTALKTLGI RLSIDDFGTG YSSLNYLHRF PFDGLKIDKS
FIDKLTESHE GQSIVEGIIN LGHAISMTVI AEGVETAEQL TYLQSLHCDE VQGYFLAKPM
PVEALSLVFS EDLSV