| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0616 |
|---|
| Symbol | |
|---|
| ID | 5386489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 727950 |
|---|
| End bp | 729053 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640863587 |
|---|
| Product | fimbrial family protein |
|---|
| Protein accession | YP_001399608 |
|---|
| Protein GI | 153949699 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ATATATTCCT CATTTTACAG TGTGAGAGGT ATAAGGCGGG ACTGCTGTTA
TTGCTACTCC TGTTATGTAC CACCAGTAGA CCGAGTTTTG CCGCACTGCA AGTTAACTCT
TGTTCTCTTG CTGCATCGGG GGCTGGAGGG GAAACACCGT TTGTCATAAA AGCACTGCCA
GTCACGTTGA CGAATGGTTT TGTCTTAGGG AGCATGAACT TCAGTGTCGT CACGACATTC
ACAAAAACAG GGACGACAGT AGATTATTTA TACCTCGGTG GTTGGTCGAT GCTTGCTGGG
GGGGCGGTTA TGCCCGTTTC TACCGGTGTT CCTGGGGTGA GGATGTCGGT GAGTGTCAGT
GACGCTTTAT TTGGGGGATA TGCGTGGGGG AATACAGAGA AGGCAACTCA GCCCTTGTTT
GTACCAGGGA CAAAAATAAC GATTGCTAAT CGAGTCACGG TCCAACTCAT TGTGACTGAT
GCCAGTATTT ATCAAGGGGG AGTGATTCAT TGGTTGAGTA TGGCGAGAGG TTTTGCGTTA
GTTTCAGGTA ATGCTCAGGT CTGGACGACT AAAAGTGTTG CTACTGGTGG CTCACGTTGT
GGTGATCTGT TGTCGTTTAA TATCGGGGCA ACTGATATCG TATTGCCACC TCCCACAGTG
GCGACATGTG ATCTAGGGGC GACCGATATT GTGGTTGCAC TGGATCCGGT TGATACCTCT
TCCCTACAAA CACAAGGTGA CCGGGTGGGC GGACAAGCTT TTTCGATCCC ACTGGGCAGT
TGCGCTAAAG ACGCTAAACC CTATATCACG TTTACCGACA GTAGTAACAA GGCTAACCGT
ACCAATATAC TGAGTTTATC ACCGAGCAGC ACGGCGACCG GTGTGGGCCT TGTGCTTGAA
AAAAGTGACG GCAATCTAGT GACATTTGGC GCAGAAAACG CCAGTGTCAG CGCCAGTAAT
GTGGGGCAAT TTTTGATTGG TACCTCAACT GCCGCAGGAG GGAGCATGCC TTTAAATCTA
ACCGCTCGCT ATATTCGCGC TGAAGGGGTG TTAAAGAGCG GTAATGTGAA AGCGGATGCA
ATCTTTACCG TCGCCTACCC TTAA
|
|---|
| Protein sequence | MKKNIFLILQ CERYKAGLLL LLLLLCTTSR PSFAALQVNS CSLAASGAGG ETPFVIKALP
VTLTNGFVLG SMNFSVVTTF TKTGTTVDYL YLGGWSMLAG GAVMPVSTGV PGVRMSVSVS
DALFGGYAWG NTEKATQPLF VPGTKITIAN RVTVQLIVTD ASIYQGGVIH WLSMARGFAL
VSGNAQVWTT KSVATGGSRC GDLLSFNIGA TDIVLPPPTV ATCDLGATDI VVALDPVDTS
SLQTQGDRVG GQAFSIPLGS CAKDAKPYIT FTDSSNKANR TNILSLSPSS TATGVGLVLE
KSDGNLVTFG AENASVSASN VGQFLIGTST AAGGSMPLNL TARYIRAEGV LKSGNVKADA
IFTVAYP
|
|---|
| |