| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0615 |
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| Symbol | papD |
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| ID | 5385274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 727206 |
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| End bp | 727925 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640863586 |
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| Product | chaperone protein PapD |
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| Protein accession | YP_001399607 |
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| Protein GI | 153949184 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGC TTTCATTAAT CGCATTGACC AGCACATTGG TATTCACCAG TTATGCCGCC
AATGCCGCGA TTGCATTAGA TCGGACGCGA ATTATTTATA ACGGGCAGGA TAAGTCCATC
AGCCTGAATA TCAGCAATGA AAATAAGACA CTGCCTTATT TAGCACAGGC ATGGATTGAG
AATGAACAAC AGCAAAAAGT CACCACCCCG TTAGTGGCAA CGCCGCCGGT TCAACGGGTG
GAAGCGGGTA AGAAAAGCGC GGTACGTATC TCTGCCACCC CTGAGGCGCT GAAATTGCCA
CAAGATCGCG AGTCACTGTT CTACTTCAAT CTGCGTGAAA TTCCGCCTCG CAGTGAAAAA
TCCAATGTCA TGCAGATTGC CTTACAAACC AAAATCAAAC TGTTCTACCG ACCAGAAGGG
ATTACCCCTG CCCCGGGCCA AATTTGGCAG GAACAACTGG TTCTGCATAA AACGGCGCAA
GGTTTTCGGC TAGAGAACCC CACTCCCTAT TACATTACGG TCGTTGGGCT GGCGGAGAAA
GGTAAGTCAT CGGCTGACAG CAATTTTCAA CCTTTGATGG TTGCGCCCAA ATCCAGTGCT
GAGCTGAAAT CTGCCAGTTT CACCGCCCCC GTCCTGACCT ACATTAATGA TTATGGTGGT
CGACCAGAAC TGAGTTTCAG TTGCAGTGGC AGCATTTGCC GGGCAGCTAA AACGATTTAA
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| Protein sequence | MKKLSLIALT STLVFTSYAA NAAIALDRTR IIYNGQDKSI SLNISNENKT LPYLAQAWIE
NEQQQKVTTP LVATPPVQRV EAGKKSAVRI SATPEALKLP QDRESLFYFN LREIPPRSEK
SNVMQIALQT KIKLFYRPEG ITPAPGQIWQ EQLVLHKTAQ GFRLENPTPY YITVVGLAEK
GKSSADSNFQ PLMVAPKSSA ELKSASFTAP VLTYINDYGG RPELSFSCSG SICRAAKTI
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