| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0601 |
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| Symbol | |
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| ID | 5387015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 705447 |
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| End bp | 706766 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640863573 |
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| Product | type II/III secretion system protein |
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| Protein accession | YP_001399594 |
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| Protein GI | 153948843 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 0.570142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGAC ATCAACTAAA AGATAAAAAA CAAAATATAA TTATATTCTC GGTTATCTTT
ATTCTCTACT TTTTGTTTGA AAACACAGCT ACTGCCAAGC AAATTTATCT GCCCATTGGT
GGTTCACACA TTATAAAAAC ACAGGAAGAG ATAGATACGG TTTTTGTCTC TGCCGCAAAA
ACAGCTGACT ATGAAATAGT CGATAATAAC AGTGTTATTA TTTATGCTAA AAAAGAAGGC
TTGGCTGAAT TCACTTTGTT CAACAAAAAT CATCAGCCGA TAAGTAAAAC ACGAGTGCTG
GTGAATAATA CTATCAATGA TGCTTATCGA AGAATACGTA CAGAGTTTCC TGATAGTAAG
ATAGAAATAA ATAAGATAGG CGAAAGCTAT ATACTTACGG GGAGTGCCGA AACCGAGGAA
GCAAAAGATA CCATTACCAG TATTATCGGC GAGGCGACTG CAAGTAAAAA AGAAAAAGAG
AGAGAAGAGA GTTATCAAAG CAACCCTGAA TATCGGGGTG TTATTAATAA AATTAAATTA
CCTCAAGCCA ATCAAGTTAA TGTAAAACTC ACTATTGTCG AAATAACGAA AGATTTTACT
GAAAACATAG GGCTAGATTG GAATTCGATA AAAAGTGCAG CAGGCGCTTT TCAGTTTTTA
AATTTTAATG CACAAAGTAT CAGCACATTA GTCCATGCGA TTAATGATGA GGCGATAGCC
AAAGTGTTGG CAGAACCGAA TCTATCGGTC TTATCTGGTG AATATGCCTC CTTCTTGGTC
GGCGGTGAAA TCCCGATTGT TAGCACCAAT CAGAATGGTA TTAGTGTCGA ATATAAAGAG
TTTGGCATTA AGTTAAACAT TGGTGCCAAA GTGAATGAGA AGAAACGTAT TCGTGTCATG
TTGGGTGAAG AGGTCAGCAG TATCGATAAA GTGTTTAATC TTAGAGGTGG GGACTCCTAC
CCTTCATTAC GCATACGTAA GGCAAATACC ACAGTAGAGT TAGGCGATGG TGAAAGTTTT
ATTCTCGGTG GCCTGATCAG TAGTACTGAA CGGGAGTCGC TTAAAAAAAT TCCGTTTATT
GGTGATGTCC CCCTACTGGG TGCGTTATTC CGTAATGCAC AAACTCAGAG GAATCAGAGT
GAGCTGGTGG TTGTCGCTAC CGTAAACCTG GTGAAACCCG TATCAGCAAG GCAGATTGAG
CTACCTGATT TTATGCATAC CTCTACGGTA GAACGTTTTT TCAATCTGAC CAATATCAAA
GACGCTAAGC GTAGAAAGCA GGCGAAAGAA TTTCTGCAAA AAGGAGGTTT TATAAAATGA
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| Protein sequence | MNRHQLKDKK QNIIIFSVIF ILYFLFENTA TAKQIYLPIG GSHIIKTQEE IDTVFVSAAK
TADYEIVDNN SVIIYAKKEG LAEFTLFNKN HQPISKTRVL VNNTINDAYR RIRTEFPDSK
IEINKIGESY ILTGSAETEE AKDTITSIIG EATASKKEKE REESYQSNPE YRGVINKIKL
PQANQVNVKL TIVEITKDFT ENIGLDWNSI KSAAGAFQFL NFNAQSISTL VHAINDEAIA
KVLAEPNLSV LSGEYASFLV GGEIPIVSTN QNGISVEYKE FGIKLNIGAK VNEKKRIRVM
LGEEVSSIDK VFNLRGGDSY PSLRIRKANT TVELGDGESF ILGGLISSTE RESLKKIPFI
GDVPLLGALF RNAQTQRNQS ELVVVATVNL VKPVSARQIE LPDFMHTSTV ERFFNLTNIK
DAKRRKQAKE FLQKGGFIK
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