Gene YpsIP31758_0553 details

Gene Information

• Locus tag: YpsIP31758_0553
• Symbol: rpoD
• ID: 5387148
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: -
• Start bp: 649574
• End bp: 651412
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640863525
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001399546
• Protein GI: 153950753
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000000359129
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGCAAA ACCCGCAGTC ACAGCTGAAG CTACTTGTCA CCCGAGGTAA GGAGCAAGGC 
TATCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCGTCGA TTCCGATCAG 
ATCGAAGACA TCATCCAGAT GATTAATGAC ATGGGCATAC AGGTACTAGA AGAAGCACCT 
GATGCTGATG ATTTGATGCT GGCCGAAAAC ACCACGGATA CCGATGATGA TGCGGCTGAA 
GCTGCTGCAC AGGTGCTTTC CAGTGTTGAA TCAGAAATCG GGCGAACCAC CGACCCGGTG 
CGTATGTATA TGCGCGAAAT GGGTACCGTT GAGCTGTTGA CACGCGAAGG CGAGATTGAT 
ATTGCCAAAC GTATCGAAGA CGGTATCAAT CAGGTTCAGT GTTCTGTTGC TGAATACCCT 
GAAGCGATCA CTTATCTGTT GGAACAATAT GATCGTGTTG AAGCGGGCGA ATCTCGTTTA 
TCTGACCTGA TCACTGGCTT TGTTGATCCA AACGCCGAAG AAGATATTGC CCCAACAGCG 
ACCCACGTTG GTTCTGAATT ATCCACTGAA GAGATGGATG ACGAAGATGA AGACGAGGAT 
GAAGACGACG ACGCAGAAGA CGATAACAGC ATCGATCCAG AGTTGGCGCG CCAGAAATTC 
AGCGATTTGC GTGAGCAGTA TGAAAACGCG CGTATGGAAA TCAAGAAAAA TGGCCGCAAT 
CACGCGAATG CTGCCGCTGA AATTCTGAAG CTTTCTGAGG TGTTCAAGCA GTTCCGTCTA 
GTGCCGAAGC AGTTCGATTA TCTGGTCAAT AACATGCGTG CCATGATGGA TCGCGTTCGT 
ACTCAAGAAC GTATCATCAT GAAGCTGTGT GTTGAGCAGT GCAAAATGCC GAAGAAAAAT 
TTCGTTACGC TGTTTTCCAG CAATGAAACC AGCGACACCT GGTTTAATGC GGCAGTGGCG 
ATGGGTAAAC CTTGGTCTGA AAAACTGAAA GATGTCTCGG AAGATGTTCA ACGCAGCTTG 
CAGAAACTGC GCCAGATCGA AGAAGAAACC GGTCTGACCA TCGAGCAAGT AAAAGACATC 
AACCGCCGTA TGTCTATCGG TGAAGCGAAA GCGCGTCGTG CCAAGAAAGA AATGGTTGAG 
GCTAACCTGC GTTTGGTTAT CTCTATTGCC AAAAAATACA CCAACCGTGG TTTGCAGTTC 
CTTGATTTGA TCCAGGAAGG CAACATTGGT CTGATGAAAG CAGTAGATAA GTTCGAATAC 
CGTCGCGGTT ATAAGTTCTC AACTTACGCA ACCTGGTGGA TTCGTCAGGC TATTACTCGT 
TCGATTGCAG ACCAGGCGCG CACTATCCGT ATTCCAGTGC ATATGATTGA GACCATTAAC 
AAACTCAACC GTATCTCACG CCAGATGTTG CAAGAGATGG GCCGTGAGCC AACGCCAGAA 
GAGTTGGCGG AACGGATGTT GATGCCGGAA GATAAGATCC GTAAAGTGCT GAAGATAGCT 
AAAGAGCCTA TCTCCATGGA AACCCCGATT GGTGATGACG AAGATTCACA TCTGGGCGAT 
TTCATTGAAG ATACCACTCT GGAGCTACCG CTGGACTCTG CAACTTCTGA GAGCCTGCGC 
TCTGCCACGC ACGATGTGTT AGCTGGCCTA ACAGCCCGTG AAGCGAAAGT TCTGCGTATG 
CGTTTCGGTA TCGATATGAA CACTGACCAC ACGTTGGAAG AAGTGGGCAA ACAGTTCGAT 
GTCACCCGTG AACGTATTCG TCAGATCGAG GCGAAGGCAT TACGTAAACT GCGTCACCCA 
AGCCGTTCTG AAGTGCTGCG TAGCTTCCTC GACGATTAA 

 

Protein sequence

MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIVDSDQ IEDIIQMIND MGIQVLEEAP 
DADDLMLAEN TTDTDDDAAE AAAQVLSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID 
IAKRIEDGIN QVQCSVAEYP EAITYLLEQY DRVEAGESRL SDLITGFVDP NAEEDIAPTA 
THVGSELSTE EMDDEDEDED EDDDAEDDNS IDPELARQKF SDLREQYENA RMEIKKNGRN 
HANAAAEILK LSEVFKQFRL VPKQFDYLVN NMRAMMDRVR TQERIIMKLC VEQCKMPKKN 
FVTLFSSNET SDTWFNAAVA MGKPWSEKLK DVSEDVQRSL QKLRQIEEET GLTIEQVKDI 
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY 
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPTPE 
ELAERMLMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTTLELP LDSATSESLR 
SATHDVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP 
SRSEVLRSFL DD