Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0456 |
Symbol | degQ |
ID | 5388478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 530334 |
End bp | 531707 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640863425 |
Product | protease DegQ |
Protein accession | YP_001399449 |
Protein GI | 153949437 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00000901384 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAA CATCATTACT TCTTAGTGCG CTAGCAATAA GCGTCGGCTT AGGTCTCGCT TCTGTTCCTA TGGTGAGTGC AGCAGCACTG CCTGCGGCGG TCGCCGGACA AACGTTACCT AGCCTGGCAC CAATGCTGGA AAAAGTATTA CCCGCCGTTG TCAGTGTTCA TGTCTCTGGG AGCCAGGCAC AGCAACAACG CTTGCCAGAA GAGTTTAAAT TCTTCTTTGG CCCGAATGCA CCATCAGGAA AAGAGAGCAG CCGGCCATTC GAAGGCTTAG GATCAGGCGT TATTATTAAC GCTGAGAAGG GCTACATCCT GACCAACAAT CACGTCATCA ATAATGCCGA TAAAATTCGT GTTCAGTTGA ATGATGGTCG TGAATACGAT GCAAAATTGT TGGGTCGTGA TGAACAAACC GACATCGCTT TACTGCAATT AACGGATGCT AAAAATCTGA CTGCGATCAA AATTGCAGAT TCCGATAACC TGCGGGTGGG GGATTTTGCT GTCGCCGTAG GTAACCCGTT TGGTCTAGGG CAAACCGCGA CGTCAGGTAT TATTTCAGCA CTGGGTCGTA GTGGCTTGAA TCTGGAAGGG CTGGAAAACT TTATCCAGAC CGATGCCTCA ATCAACCGTG GTAATTCTGG CGGTGCTCTG GTGAATCTGG ATGGGGAACT GATCGGAATT AATACCGCCA TCCTTGCGCC AGGTGGCGGT AATATCGGTA TCGGCTTCGC TATCCCAAGT AACATGGCAC AAAACCTCAG CCAGCAGTTG ATCGAGTTTG GCGAAGTGAA ACGTGGGCTG CTCGGTATCC GTGGTAGTGA GATGACGGCT GACATTGCGA AAGCCTTTAA TATTGATGCT CAGCGTGGGG CTTTTGTCAG TGAAGTGCTG CCAAAATCAG CGGCAGCGAA AGCCGGGATC AAACCAGGTG ATGTGTTGAT TTCCGTTGAT GGGAAAAAGA TTAGCAGCTT TGCTGAATTG CGCGCCAAAG TCGGGACAAC GGGGCCAGGC AAAACCATTA AAATTGGTTT ACTGCGCGAA GGGAAACCAC TGGAAGTATC GGTGACGCTG GATAACAGTA GCTCAACATC CACCAGCGCT GAAAATTTAT CGCCATCATT ACAGGGCGCA TCCCTGAGTA ACGGTGAGCT CAAAGACGGT AGTAAGGGGA TCAAAGTTGA TAGCGTCACT AAAGGTTCGC CAGCCGCACA ATCTGGCTTA CAAAAAGATG ATGTGATTAT TGCCGTAAAC CGCGAACGGG TTAAGGATAT TGCTGAGTTG CGTAAAGCCA TCGAAGCCAA ACCTGCCGTG ATTGCACTGA ATATCGTGCG TGGTGAAGAT AATATTTACT TATTAATCCG CTAA
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Protein sequence | MKKTSLLLSA LAISVGLGLA SVPMVSAAAL PAAVAGQTLP SLAPMLEKVL PAVVSVHVSG SQAQQQRLPE EFKFFFGPNA PSGKESSRPF EGLGSGVIIN AEKGYILTNN HVINNADKIR VQLNDGREYD AKLLGRDEQT DIALLQLTDA KNLTAIKIAD SDNLRVGDFA VAVGNPFGLG QTATSGIISA LGRSGLNLEG LENFIQTDAS INRGNSGGAL VNLDGELIGI NTAILAPGGG NIGIGFAIPS NMAQNLSQQL IEFGEVKRGL LGIRGSEMTA DIAKAFNIDA QRGAFVSEVL PKSAAAKAGI KPGDVLISVD GKKISSFAEL RAKVGTTGPG KTIKIGLLRE GKPLEVSVTL DNSSSTSTSA ENLSPSLQGA SLSNGELKDG SKGIKVDSVT KGSPAAQSGL QKDDVIIAVN RERVKDIAEL RKAIEAKPAV IALNIVRGED NIYLLIR
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