| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0455 |
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| Symbol | degS |
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| ID | 5384836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 529156 |
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| End bp | 530244 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640863424 |
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| Product | serine endoprotease |
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| Protein accession | YP_001399448 |
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| Protein GI | 153949989 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.000102083 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCTTA AGCTATTGCG TTCTATTATT TTGGGGCTAA TTGTTGCCGG TATTCTGCTG
GTTGCCCTAC CCATGCTCCG CAGCCCAGGT TATTTATTCT CTGGAAAAAG CAATAACGTA
AATGAAGAGG TTCCTACCAG TTATAACCAA GCAGTACGTC GTGCCGCACC GGCGGTGGTC
AATGTCTATA ACCGGAGCCT GAGCGCTACA CAGCAGGGGT TAGCCATCCG TACGCTGGGC
TCGGGTGTGA TCATGAGCGA TAAGGGCTAT ATCCTTACCA ATAAACACGT TATCAATGAT
GCAGAACAGA TCATTGTCGC CATGCAAAAT GGCCGTATCT CAGAAGCTTT ATTGGTCGGT
TCAGATAATC TGACAGATTT AGCCGTCCTA AAGATTGACG CAACAAACCT GCCGGTGATC
CCCATTAATA TTAACCGCAC ACCACATATT GGTGACGTCG TGTTGGCAAT TGGTAACCCT
TATAACCTTG GGCAGACAGT AACGCAGGGG ATTATCAGTG CAACCGGGCG TATTGGTTTA
AGCTCTTCCG GGCGGCAAAA TTTCCTGCAA ACAGATGCAT CAATTAATCA GGGTAATTCC
GGCGGTGCGC TGGTCAACAC CCTTGGCGAG CTAATGGGGA TCAACACGCT CTCATTTGAT
AAAAGCAATA ATGGCGAAAC ACCGGAAGGC ATCGGCTTTG CGATCCCAAC AGCACTGGCA
ACGAAAGTGA TGGAAAAACT GATCCGTGAT GGGCGGGTGA TCCGTGGTTA TATCGGTATT
ACCGGCGAGG AGTACCCACC GTTTAATGCT AACGATAATG GCTCAGATCG GGTACACGGT
ATTAAGGTCA AAAAAGTTTC ACCAGACGGC CCAGCGGCCC AGGCAGGAAT ACACGTTGGC
GATATCATTC TTAACGTGAA TAATAAACCG GCAACCTCCG TGATCGAAAC TATGGATCAG
GTCGCAGAAG TCCGCCCTGG TACGACCATT CCTGTTTTAC TATTACGTAA TGGTCAGCAG
ATAGCGGTTC AAATCACCAT CACTGAACTC GATCAGAATG AGATGCTGAC CACCCAAGCA
GCAGATTAA
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| Protein sequence | MFLKLLRSII LGLIVAGILL VALPMLRSPG YLFSGKSNNV NEEVPTSYNQ AVRRAAPAVV
NVYNRSLSAT QQGLAIRTLG SGVIMSDKGY ILTNKHVIND AEQIIVAMQN GRISEALLVG
SDNLTDLAVL KIDATNLPVI PININRTPHI GDVVLAIGNP YNLGQTVTQG IISATGRIGL
SSSGRQNFLQ TDASINQGNS GGALVNTLGE LMGINTLSFD KSNNGETPEG IGFAIPTALA
TKVMEKLIRD GRVIRGYIGI TGEEYPPFNA NDNGSDRVHG IKVKKVSPDG PAAQAGIHVG
DIILNVNNKP ATSVIETMDQ VAEVRPGTTI PVLLLRNGQQ IAVQITITEL DQNEMLTTQA
AD
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