| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0402 |
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| Symbol | cafA |
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| ID | 5386410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 462178 |
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| End bp | 463647 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640863371 |
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| Product | ribonuclease G |
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| Protein accession | YP_001399395 |
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| Protein GI | 153949561 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.124199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCTG AATTACTGGT CAATATTACA CCGTCTGAAA CGCGTGTTGC TTATATTGAT
GGCGGCATCC TGCAAGAAAT ACATATCGAG CGTGAAGCCA AAAGAGGGAT CGTTGGCAAT
ATTTATAAAG GGCGAGTCAG CCGGGTTTTA CCGGGTATGC AAGCTGCTTT TGTTGACATA
GGTCTGGATA AAGCCGCTTT CCTCCATGCT TCCGATATCA TGCCCCACAC CGAATGCGTG
GCCGGGGATG AACAGAAAAA CTTCAATGTG CGCGATATCG CCGAACTGGT CCGTCAGGGG
CAGGATTTAA TGGTACAAGT GGTGAAAGAT CCCTTGGGTA CCAAAGGCGC ACGTTTGACG
ACCGATATTA CTCTTCCTTC TCGCTATCTG GTGTTAATGC CCGGAGCTGC CCATGTTGGG
GTTTCCCAGC GGATTGAAAG TGAAGCAGAG CGCGAACGCC TAAAAAAGAC GGTTGCGGCT
TACTGTGATG AGCAGGGCGG TTTTATTATT CGTACTGCCG CTGAAGGGAT TGGCGAAGAA
GAGCTATCCG CTGATGCCGC GTTCCTTAAA CGTTTGTGGA CCAAAGTTCA GGAGCGTAAG
AAGCGTAATA TCACCAAATA TAAGCTGTAT GGTGAAATGG CGCTGGCGCA ACGCGTATTG
CGTGATTTTG CTGGTGCGGC GCTGGATAAA ATCCGCGTTG ACTCAAAATT GACTTACGAT
TTGCTGGTGG AGTTCACCCG CGAATATATT CCAGAAATGA CGGACAAGCT GGAGCTGTAT
ACTGGGAAGC AACCTATTTT CGATCTCTAT GATGTCGAGA ATGAAATTCA GCGCTCTCTG
GAGCGTAAAG TTGAATTAAA ATCAGGTGGT TATCTGATTA TCGATCAGAC AGAAGCGATG
ACTACCGTGG ATATTAACAC TGGGGCATTT GTCGGGCATC GGAATCTTGA GGAAACCATT
TTCAATACCA ATATTGAGGC GACGCAGGCC ATTGCCCGCC AATTGCGGAT GCGTAATCTG
GGCGGGATTA TCATTATTGA TTTCATTGAT ATGAGTAATG AAGATCATCG CCGGCGGGTA
TTGCATTCAT TGGAACAAGC ACTGAGTAAA GATCGCGTAA AAACCAGTAT TAACGGCTTC
TCCCAGCTAG GCTTAGTCGA AATGACGCGT AAGCGTACGC GTGAAAGTAT TGAGCATGTT
TTATGCCATG AATGCCCAAC CTGCCGTGGC CGTGGCACGG TAAAATCCGT AGAGACCGTG
TGCTACGAAA TCTTGCGTGA AATTGTCCGT GTTCATCATG CTTATGATTC TGACCGTTTC
TTGGTCTATG CTTCTCCGGC TGTAGGTGAG GCGCTGAAAG GCGAAGAGTC TCATGCACTG
GCCGAGGTGG AAATCTTCGT CGGTAAGCAG GTAAAAGTTC AGATAGAGCC ACTGTATAAC
CAAGAACAGT TTGACGTGGT GATGATGTAA
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| Protein sequence | MTAELLVNIT PSETRVAYID GGILQEIHIE REAKRGIVGN IYKGRVSRVL PGMQAAFVDI
GLDKAAFLHA SDIMPHTECV AGDEQKNFNV RDIAELVRQG QDLMVQVVKD PLGTKGARLT
TDITLPSRYL VLMPGAAHVG VSQRIESEAE RERLKKTVAA YCDEQGGFII RTAAEGIGEE
ELSADAAFLK RLWTKVQERK KRNITKYKLY GEMALAQRVL RDFAGAALDK IRVDSKLTYD
LLVEFTREYI PEMTDKLELY TGKQPIFDLY DVENEIQRSL ERKVELKSGG YLIIDQTEAM
TTVDINTGAF VGHRNLEETI FNTNIEATQA IARQLRMRNL GGIIIIDFID MSNEDHRRRV
LHSLEQALSK DRVKTSINGF SQLGLVEMTR KRTRESIEHV LCHECPTCRG RGTVKSVETV
CYEILREIVR VHHAYDSDRF LVYASPAVGE ALKGEESHAL AEVEIFVGKQ VKVQIEPLYN
QEQFDVVMM
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