Gene YpsIP31758_0400 details

Gene Information

• Locus tag: YpsIP31758_0400
• Symbol: mreD
• ID: 5387295
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 461093
• End bp: 461581
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640863369
• Product: rod shape-determining protein MreD
• Protein accession: YP_001399393
• Protein GI: 153949356
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2891] Cell shape-determining protein
• TIGRFAM ID: [TIGR03426] rod shape-determining protein MreD

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 0.269342
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAATCGTT ACAGTAGTCA TGGTCGCTGG GTTATCTGGC TATCCTTCCT GATTGCGATG 
GTGCTACAAA TTATGCCGTG GCCTGAACAG ATCTATATGT TTCGGCCCTC ATGGTTAGCC 
TTGGTACTCA TTTATTGGGT GATGGCCTTG CCACACCGGG TGAATGTTGG CACGGGGTTT 
ATTCTGGGGC TGATTATGGA CCTTATTTTA GGATCGACTC TGGGAGTCCG GGCGTTGGCA 
TTCAGTATCA TCGCCTATCT GGTGGCCTTT AAGTTTCAGT TATTCCGTAA TATGGCACTG 
TGGCAACAGG CACTTATCGT CATGCTGCTT TCGCTGACGA TGGATGTTGT GGTGTTTTGG 
TCTGAGTTCT TGGTGATTAA TGTCGCATTC CGGCCCGAAG TTTTCTGGAG TAGCGTTGTC 
AACGGCATTC TCTGGCCATG GCTATTCCTG CTAATGCGTA AAATTCGCCG CCAATTTTCG 
GTGCAATAA 

 

Protein sequence

MNRYSSHGRW VIWLSFLIAM VLQIMPWPEQ IYMFRPSWLA LVLIYWVMAL PHRVNVGTGF 
ILGLIMDLIL GSTLGVRALA FSIIAYLVAF KFQLFRNMAL WQQALIVMLL SLTMDVVVFW 
SEFLVINVAF RPEVFWSSVV NGILWPWLFL LMRKIRRQFS VQ