| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0330 |
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| Symbol | |
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| ID | 5387952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 385627 |
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| End bp | 389835 |
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| Gene Length | 4209 bp |
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| Protein Length | 1402 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640863300 |
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| Product | RHS/YD repeat-containing protein |
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| Protein accession | YP_001399324 |
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| Protein GI | 153949971 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.581458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAAG CGGCCCGTGT TGATGACAAG CTTTATCATT CCAGTGCCTT AGCGGGTTTT
ATTATTGGCT CCATTATTGG TGCCGCCGTG ATTTTTGCGG CCGCGGCTTA CGCCGCCTCC
ATTGTTCTCA CCGGCGGGGC GACGCTGGTC GCTACCGGCT TTATTGTGGG TATGGGGGTG
ACCACGCTGG GCGTCGTTGC CGGTGGGTTA ATACGCTCCG TGGGCGAAAA AATAGGGAGC
ATGTGCCATC ACGATGTCGG ACAAATTACG ACAGGGTCCA AAAACGTTAA AGTGAACAGT
AAACGGGCGG CGCATGTCGA GCTCAGTACC GTGGCCTGTA AAGATGACTC CGCCATTCAG
CGCATGGCCG AAGGTTCGTC AAATATCTTT ATTAACAGTA AAGCCGCCGT TCGTCTGGAA
GATAAAACGA CCTGTGATGC GGTTGTCGAT TCCGCTTCCA GTAATGTGAC GTTTGGTGGG
GGGCGCGTTC AGTATCTCGA TATTAAACGC GAGATTTCTG ATGAAATGCG TGATTTGTCA
GAGAAGCTGT TTATTGTCGC CGGGCTGGCG GGCGGCATAT TTGGGGCGGC AAAACAGGCG
GGGTGTTTCG GCCTTAAATG CCTGAGCAAG ATTGCGTTGG GTGAGATGGC CGGGGCGGCT
GCCGGGTATG GGCTGGAAAA AGGGGTTGGG GCCATCGCCG GTTATTTCGG TTACCCGGTT
GATGTGATCA GTGGACAGAA ATTGCTGACA GGTGAGGGCG ATGATACCGA TTTTATTCTG
CCGGGTATCT TCCCGCTGCA CTGGAGCCGG ATTTATCGCA GTGAAAATCA CCATGTCGGG
GCGCTGGGAC AAGGCTGGTC TCTGGTATGG GAGCGTTCAT TACGCAAAGA AGATGACAGC
ATTGTTTATC AGAATGATGA AGGTCGGGAG ATTGTCTTTC CCCTGATTAA ACGTGGAGAG
CGCTATTTCT CCCCCACGGA GCATATCTGG CTGGCACGTA CCGAGCGTGA TACCTATGCC
ATCAGCAGCC CGTTTGAAAC CTGTTTTATT TTTGAGGCCT TTTCTGAGGC TGGCGTCGCG
AAATTAGCCA GCCTCGAAGA TATCAATGGT CATGCCCTGT ATTTCTTTTA TGACGATATC
GGGCAACTGA AAAAAATATC GACCACCAGC GGCTATGGGG TGTATTGCCA GTATGAAAAA
GGGCGTCTGG TGTCCGTTGC CTGTGTTAAG GGCGGTACGC CGGGCACACT GGTCCGCTAC
CAGTATAATG AACAGCACCA GTTGGTTAGC GTCACTAACC GTGAGGGGCA AATCACCCGC
CAGTTTGGTT ACCATGGCCA TCTGATCAAT AAACTGGCGG ATGTCAGGGG GCTGGAGTGC
CGTTACACAT GGGCTGATAT CGGCGGAACC CCGCGAATTA CGCACAGTGC CACCAATCTG
GGGGAGCAGT GGCAGTTTGA TTATGATATC GACAATCAAC AGACCACCCT GACGGACCTC
AATACCGGGC AGACCGCCTG CTGGGGATAT AACGCCCAAC ATTTAATTAC CGACTATCGG
GATTTTGATG GCGGGAAATA TGCATTTGAC TACAACGACC TCAATATGCC GGTACGCGTT
GTGCTGGCAG GCGAGAGAAC GCTCGTTCTG GTTTACGATG CACTGGCGCG CCCGATCCAG
ATCACCGATC CGCTAAAACG TGAAACCCAC ATTGATTATC ACCGTAACAG TCTGCGGGTG
GTGCGCCGTC AGTACCCTGA CGGGCAGGTC TGGAAGGGGG AATATGACCG TACCGGCCGT
TTGCTGAAAG AGAACGCGCC GGATGGCGGG GTGACGCTTT ATCATTATCC AGGGGCCTCA
TCCCTTCCTG AACGCATAAC CAATGCCGTA GGGGCGCAGA CACACCTTGG TTGGGAAAGG
CACGGGCAAC TGACGGAGCA CACCGACTGC TCGGGTAAAC TGACCCGCTA CGAATATGAT
ATCGATGGCC ATCTGCTGAC GGTCATCGAT GCTGAAAACC ATTCAACACA TTACAGCTAC
AACCGTCTCG GGCAGCCCAC CGGGGTCAGG TACGCCGATG GCCGCAAAGA GCAGTTGCGG
TATAACGCTC AGGGGCTGGT TGAACAGTTT ACCGATCCTG TCGGGCGGCA GTTGCACTGG
CGTTATAACC TGCGGGGTCA GCCGGTCAGC TTTACTGATC GTCTGCAACG GGAATACCGT
TACCGCTATG ACTGCCATGG GCAGATGATT GAGCTGGATA ATGCCAATGG GGGCCAGTAT
CACTTCCGGT GGAGCAGCGG CGGGCAATTG GTGGAAGAGC AGTATCCCGA TAACCTTGTC
CGGCGTTATC GCTATGGGGA GAGCGGGATG CTGATGGCGC TGGAGACCAC CGCGCCCACG
GTTGACGATC TTACCGTCTC CCGGCAGGTC AGTTTTGACT ATGATGCGGG CGGGCGAATG
ACGCAGCGCC TGACGGGCAT GAGTGCGACC CGGTATGACT GGGACATCAT GGACCGTTTA
TTGCTGGCCG AGCGTGTGCC AACGGCGGTG GGCGAACAGG CGGGGATCGT CGGTAATGGT
GTTCGTTTGG CGTATGACAA GGCCGGGCAT TTACTGACGG AAAGCGGTGA CCTGGGTGCG
GTGACGTATC AGTGGGATCC GCTGCATCAT CTGGCCGCCC TGACGCTGCC CGATGGTCAG
ACGCTGTCAT GGTTGCGTTA CGGTGCGGGC CATGTCAGTG CCATTCGTCA TGGTGATACG
CTTATTTCCG AGTTCAGCCG GGATAATCTT CATCGGGAAG TGAGCCGGAC CCAGGGTATT
TTGACGCAGT ATCGTGATTA TGACGCGATG GGGCGGCGGT TGTGGCAATC GGCGGGTTCT
GATGCGCCGA CAGTGGCGGC CGATCTGCTG CCCCGTCAGG GGGATATCTG GCGTAAATTT
AGCTTTGACA CTGCCGGTGA ACTGAGCATG GCCACCGATT TTATCCGGGG TGAGCAGCAG
TACCGTTATG ATGCGGAAGG GCGGCTGACT GACAGCCGGG AGCGTCATCA GTTATCCGTT
GCGGAGGATT TTGCTTACGA CAATGCGGAT AACCTGCTGA ACCTGAGGAA ACTGCCGTTT
GACACCGTCG ATCCACTGTA CGATACACCG GTCGCCAACA ACCGTTTGAC GCAATGGCAG
CATTACCGTT TTGAGTATGA TGCCTGGGGA AACATGACCA CGCGGCATGC CGGTGGTCGG
ATGCAACATT TTGCCTATGA CGATGATAAC CGGCTGCTGC GGGCCTGGGG AACCGGGCCG
TTAGGGGAGC ATGACAGCCA CTATCGGTAT GATGCGCTGG GGCGGCGTAT CCACAAATCG
GTGACGATAA AGCGCGGCGC AGAAAAAACC ACCCGTCAGA CCGATTTTAT CTGGCAGGGA
CTGCGGTTAT TGCAGGAGCA ACATGCGGAC GGCAACGCGA CCTATATTTA CGACCCGAAC
GAAAGTTATA CGCCGCTGGC GCGGGTCGAT CAGCGTCATG GCGAGACAGA AAGTCAGGTG
TATTATTTTC ATACGGATAT CAACGGTACC CCGCTGGATG TCACGGACGG AGAGGGTAAG
CACCGCTGGT CAGGGAAATA CCACGCCTGG GGCAAAGTTA CCCGGCAGAA TGTCAGCGAT
CCAAGGCAAA GCACGGTCAG CCGGTTCGCG CAGCCGCTGC GTTATCCGGG GCAATACAGT
GATGACGAGA CGGGTTTGCA CTACAATACG TTCAGGTACT ATGACCCGGA GATAGGGCGA
TTTAGTACGC AGGACCCGAT AGGGCTGGCG GGGGGGGTGA ATCTTTATCA GTATGGGCCA
AATCCGTTAA CGTGGATCGA TCCTTGGGGT TATACAGGAA CATATATTTT TACTGACGGT
GTTGTATCTT ATATAGGTAA GGGCCCGTTA GGACGAATGG TAGCGTCTAT GGGACAAAGA
ATTGGCGGTT CTTTGAATGC AATACAGTCG GCTCATTTGG ACTTTGGTAG TGATAAGTTA
GGATTCATGG TAGAACATCG GATGATGGAA AAGTATGGTG CTCGTTATTC TCCCGACTTT
GCTAACAGTG AACGCGTTGG TTCACCGGGA AAAAAATTAT ATGATGCCGC CGATTTGAAA
ACACAAAAAA AGGTTGACCG TCTAGCTAAT AAATTAGATA AGAATTTTAA GTCATCTAAA
GGATGTTAA
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| Protein sequence | MFEAARVDDK LYHSSALAGF IIGSIIGAAV IFAAAAYAAS IVLTGGATLV ATGFIVGMGV
TTLGVVAGGL IRSVGEKIGS MCHHDVGQIT TGSKNVKVNS KRAAHVELST VACKDDSAIQ
RMAEGSSNIF INSKAAVRLE DKTTCDAVVD SASSNVTFGG GRVQYLDIKR EISDEMRDLS
EKLFIVAGLA GGIFGAAKQA GCFGLKCLSK IALGEMAGAA AGYGLEKGVG AIAGYFGYPV
DVISGQKLLT GEGDDTDFIL PGIFPLHWSR IYRSENHHVG ALGQGWSLVW ERSLRKEDDS
IVYQNDEGRE IVFPLIKRGE RYFSPTEHIW LARTERDTYA ISSPFETCFI FEAFSEAGVA
KLASLEDING HALYFFYDDI GQLKKISTTS GYGVYCQYEK GRLVSVACVK GGTPGTLVRY
QYNEQHQLVS VTNREGQITR QFGYHGHLIN KLADVRGLEC RYTWADIGGT PRITHSATNL
GEQWQFDYDI DNQQTTLTDL NTGQTACWGY NAQHLITDYR DFDGGKYAFD YNDLNMPVRV
VLAGERTLVL VYDALARPIQ ITDPLKRETH IDYHRNSLRV VRRQYPDGQV WKGEYDRTGR
LLKENAPDGG VTLYHYPGAS SLPERITNAV GAQTHLGWER HGQLTEHTDC SGKLTRYEYD
IDGHLLTVID AENHSTHYSY NRLGQPTGVR YADGRKEQLR YNAQGLVEQF TDPVGRQLHW
RYNLRGQPVS FTDRLQREYR YRYDCHGQMI ELDNANGGQY HFRWSSGGQL VEEQYPDNLV
RRYRYGESGM LMALETTAPT VDDLTVSRQV SFDYDAGGRM TQRLTGMSAT RYDWDIMDRL
LLAERVPTAV GEQAGIVGNG VRLAYDKAGH LLTESGDLGA VTYQWDPLHH LAALTLPDGQ
TLSWLRYGAG HVSAIRHGDT LISEFSRDNL HREVSRTQGI LTQYRDYDAM GRRLWQSAGS
DAPTVAADLL PRQGDIWRKF SFDTAGELSM ATDFIRGEQQ YRYDAEGRLT DSRERHQLSV
AEDFAYDNAD NLLNLRKLPF DTVDPLYDTP VANNRLTQWQ HYRFEYDAWG NMTTRHAGGR
MQHFAYDDDN RLLRAWGTGP LGEHDSHYRY DALGRRIHKS VTIKRGAEKT TRQTDFIWQG
LRLLQEQHAD GNATYIYDPN ESYTPLARVD QRHGETESQV YYFHTDINGT PLDVTDGEGK
HRWSGKYHAW GKVTRQNVSD PRQSTVSRFA QPLRYPGQYS DDETGLHYNT FRYYDPEIGR
FSTQDPIGLA GGVNLYQYGP NPLTWIDPWG YTGTYIFTDG VVSYIGKGPL GRMVASMGQR
IGGSLNAIQS AHLDFGSDKL GFMVEHRMME KYGARYSPDF ANSERVGSPG KKLYDAADLK
TQKKVDRLAN KLDKNFKSSK GC
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