| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0209 |
|---|
| Symbol | uvrD |
|---|
| ID | 5385614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 235603 |
|---|
| End bp | 237765 |
|---|
| Gene Length | 2163 bp |
|---|
| Protein Length | 720 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640863175 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_001399206 |
|---|
| Protein GI | 153947747 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTTT CTGATCTGCT CGACAGCCTG AATGAAAAAC AACGTGACGC CGTGGCCGCG
CCGCGCGGCA ACTTGTTGGT ACTGGCCGGT GCAGGCAGTG GCAAAACGCG GGTGCTGGTT
CACCGTATCG CCTGGCTGTT GTCGGTAGAG AATGCCTCGC CGTATTCGAT TATCTCGGTA
ACCTTTACCA ATAAAGCGGC GGCTGAAATG CGCCACCGTA TTGAACATCT GATTGGCACC
AGCCAAGGCG GGATGTGGAT CGGGACTTTC CACGGTTTGG CGCACCGTCT GCTGCGTGCT
CACCATCTGG ATGCCAATCT GCCACAAGAT TTTCAAATCC TGGATAGCGA TGACCAACTG
AGGTTATTGA AACGCCTGGT CAAAGCACTC AATTTGGATG AGAAACAATG GCCCCCGCGT
CAGGCGATGT GGTACATCAA CGGCAAAAAA GACGAAGGGC TGCGCCCACA ACATATTGAG
AGCTACGGTA ATCCGGTTGA GGCCACCTGG CTACGTATCT ATCAGGCTTA TCAGGAAGCG
TGCGACCGCG CGGGTCTGGT TGATTTTGCC GAGCTGTTGC TACGAGCGCA CGAGCTGTGG
CTGAACAAAC CACATATTCT TAATCATTAT CGTGAACGCT TTACCAATAT TTTGGTGGAT
GAGTTTCAGG ATACCAACAA CATCCAATAT GCCTGGATCC GCTTGTTGGC CGGTGAACGT
TCCAATGTGA TGATCGTCGG CGACGATGAC CAGTCAATCT ATGGTTGGCG CGGCGCGCAG
GTCGAGAATA TCCAACGTTT CTTGAAGGAT TTCCCCGGTG CGGAGACCAT CCGCCTGGAG
CAGAATTACC GCTCGACCAG CATCATTCTG GCTGCCGCCA ATGCCCTGAT TGCCAACAAT
GACGGCCGCA TGGGTAAAAA TCTGTGGACC GATGGCGCGG AGGGCGAACC TATCTCCCTC
TATTGTGCGT TTAACGAGTT AGATGAAGCC CGTTTTGTGG TCAATCGTAT CAAAGCCTGG
CAGGACAACG GCGGTGCGCT GAATGATTGT GCCATTTTGT ACCGTAGCAA CGCCCAATCG
CGCGTATTAG AAGAAGCGTT ACTGCAAACG GCAACCCCGT ACCGTATTTA TGGGGGGCAG
CGCTTCTTCG ACCGCCAGGA AATTAAAGAC TCACTGGCTT ATCTGCGCCT GATTTCCAAT
CGTAATGACG ACGCCGCGTT TGAACGGGTG GTGAATACAC CCACTCGGGG GATTGGCGAT
CGCACATTGG ATGTGGTGCG TCAAACCGCC CGTGACCGCC AGTTAACGCT ATGGCAATCA
ACCCGTGCCA TGTTGCAGGA AAAAGTGCTG GCAGGGCGTG CCGCGTCCGC ATTACAACGC
TTTGTCGAGC TGATCGATTC ACTGGCGCGC GAAACGGCTG ATATGCCGCT ACACGTGCAA
ACTGATCGCG TTATTCGTGA TTCTGGCTTG TGGTCGATGT ACGAACAGGA AAAAGGCGAG
AAAGGTCAGG CACGTATCGA GAACCTTGAA GAGCTGGTTA CGGCGACCCG TCAATACAGC
TATCAGGATG AAGATCAGGA TCTGATGCCG CTACAGGCCT TCTTATCCCA TGCGGCACTG
GAAGCCGGAG ATGGCCAGGC CGATGCCTAT CAGGATGCGG TGCAATTAAT GACTCTCCAT
TCAGCGAAAG GCTTGGAGTT TCCACAGGTA TTTATTGTGG GAATGGAAGA AGGGATGTTC
CCGAGCCAAA TGTCATTGGA TGAGGGGGGG CGTTTGGAAG AGGAGCGGCG TTTGGCCTAC
GTGGGGTTAA CCCGTGCGAT GCAGAAACTG ACGTTATGTT ACGCCGAAAG CCGCCGCCTA
TACGGTAAAG AGGTCAATCA CCGCCCTTCA CGCTTTATCG GCGAACTGCC GCAGGAGTGC
GTCGAAGAGG TCCGGCTGCG CGCCAGTGTT TCCCGCCCGG TGAATCACCG CCGAATGGGG
ACCCCGATGC ACGAGAATGA CAGCGGTTTC TCATTGGGCC AGCGAGTGCG GCACCCTAAA
TTTGGCGAGG GTACTATTGT GAATTTGGAA GGCAGTGGTG AGCACAACCG GTTGCAGGTT
GCCTTCCCCG GAGAGGGGAT TAAGTGGCTG GTCGCGGCCT ATGCGCGTCT GGAACCCGTG
TAA
|
|---|
| Protein sequence | MDVSDLLDSL NEKQRDAVAA PRGNLLVLAG AGSGKTRVLV HRIAWLLSVE NASPYSIISV
TFTNKAAAEM RHRIEHLIGT SQGGMWIGTF HGLAHRLLRA HHLDANLPQD FQILDSDDQL
RLLKRLVKAL NLDEKQWPPR QAMWYINGKK DEGLRPQHIE SYGNPVEATW LRIYQAYQEA
CDRAGLVDFA ELLLRAHELW LNKPHILNHY RERFTNILVD EFQDTNNIQY AWIRLLAGER
SNVMIVGDDD QSIYGWRGAQ VENIQRFLKD FPGAETIRLE QNYRSTSIIL AAANALIANN
DGRMGKNLWT DGAEGEPISL YCAFNELDEA RFVVNRIKAW QDNGGALNDC AILYRSNAQS
RVLEEALLQT ATPYRIYGGQ RFFDRQEIKD SLAYLRLISN RNDDAAFERV VNTPTRGIGD
RTLDVVRQTA RDRQLTLWQS TRAMLQEKVL AGRAASALQR FVELIDSLAR ETADMPLHVQ
TDRVIRDSGL WSMYEQEKGE KGQARIENLE ELVTATRQYS YQDEDQDLMP LQAFLSHAAL
EAGDGQADAY QDAVQLMTLH SAKGLEFPQV FIVGMEEGMF PSQMSLDEGG RLEEERRLAY
VGLTRAMQKL TLCYAESRRL YGKEVNHRPS RFIGELPQEC VEEVRLRASV SRPVNHRRMG
TPMHENDSGF SLGQRVRHPK FGEGTIVNLE GSGEHNRLQV AFPGEGIKWL VAAYARLEPV
|
|---|
| |