Gene YpsIP31758_0180 details

Gene Information

• Locus tag: YpsIP31758_0180
• Symbol: rho
• ID: 5387047
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 203168
• End bp: 204427
• Gene Length: 1260 bp
• Protein Length: 419 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640863142
• Product: transcription termination factor Rho
• Protein accession: YP_001399177
• Protein GI: 153947228
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 54
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTTA CCGAATTAAA GAATACGCCG GTTTCTGATC TGATAACACT TGGCGAAAAT 
ATGGGGCTGG AAAACCTGGC CCGGATGCGT AAACAAGATA TTATTTTCTC TATTCTAAAG 
CAGCATGCCA AAAGTGGAGA AGATATCTTC GGTGACGGTG TATTGGAGAT ATTGCAGGAT 
GGATTTGGTT TCCTCCGCTC TGCAGACAGC TCCTACCTCG CCGGTCCTGA CGACATCTAT 
GTATCCCCAA GCCAAATTCG CCGTTTCAAC CTCCGCACTG GTGATACCGT TGCCGGTAAG 
ATTCGTCCGC CTAAAGAAGG CGAGCGTTAT TTTGCATTGT TGAAAGTTAA TGAAGTTAAC 
TATGACAAGC CGGAAAACGC CCGTAATAAA ATCCTATTCG AAAACTTAAC GCCGTTACAT 
GCCAACTCTC GTCTGCGCAT GGAACGTGGT AATGGTTCGA CTGAAGATTT AACCGCCCGT 
GTACTGGATT TGGCATCGCC AATTGGTCGT GGCCAACGTG GTCTGATTGT GGCCCCACCA 
AAAGCCGGTA AAACTATGCT GTTGCAGAAC ATCGCGACCA GCATTGCTTA CAATCACCCT 
GATTGTGTTT TGATGGTATT GCTGATTGAC GAGCGTCCAG AAGAAGTAAC CGAGATGCAA 
CGTCTGGTTA AAGGTGAAGT TATTGCTTCT ACTTTTGATG AACCAGCATC CCGTCACGTT 
CAAGTCGCTG AAATGGTTAT CGAGAAAGCA AAACGTCTGG TTGAGCATAA AAAAGACGTT 
ATTATCTTGC TGGACTCTAT TACCCGTTTA GCCCGTGCTT ACAACACCGT TGTACCTGCT 
TCAGGCAAAG TATTGACCGG TGGTGTTGAT GCGAACGCGT TACATCGCCC TAAACGTTTC 
TTTGGTGCCG CACGTAATGT TGAAGAGGGC GGAAGCCTGA CCATCATTGC AACCGCGCTG 
GTTGATACCG GTTCTAAAAT GGATGAAGTT ATCTACGAAG AATTTAAAGG TACCGGTAAC 
ATGGAATTGC ATCTGTCCCG TAAAATTGCG GAGAAACGTG TATTCCCAGC CATTGACTTC 
AACCGCTCTG GTACCCGTAA AGAAGAGTTG CTGACTACGA CTGATGAGCT ACAAAAAATG 
TGGATCTTGC GCCGAATTCT TCATCCAATG GGTGAAATTG ATGCAATGGA ATTCCTCATC 
AGTAAGCTGG CGACTGCGAA AACTAACGAT CAGTTCTTTG ATAATATGAG ACGCTCGTAA 

 

Protein sequence

MNLTELKNTP VSDLITLGEN MGLENLARMR KQDIIFSILK QHAKSGEDIF GDGVLEILQD 
GFGFLRSADS SYLAGPDDIY VSPSQIRRFN LRTGDTVAGK IRPPKEGERY FALLKVNEVN 
YDKPENARNK ILFENLTPLH ANSRLRMERG NGSTEDLTAR VLDLASPIGR GQRGLIVAPP 
KAGKTMLLQN IATSIAYNHP DCVLMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV IILLDSITRL ARAYNTVVPA SGKVLTGGVD ANALHRPKRF 
FGAARNVEEG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN MELHLSRKIA EKRVFPAIDF 
NRSGTRKEEL LTTTDELQKM WILRRILHPM GEIDAMEFLI SKLATAKTND QFFDNMRRS