| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0151 |
|---|
| Symbol | |
|---|
| ID | 5384423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 169758 |
|---|
| End bp | 170750 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640863112 |
|---|
| Product | inner membrane ABC transporter permease protein YjfF |
|---|
| Protein accession | YP_001399147 |
|---|
| Protein GI | 153949982 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.302956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAGC GTAATGTTCC CTTGCTGATT ACTATCGCCG TTTTTATTCT GGGATATGCT
TTCTGTCTGA GTCAATTTCC CAGTTTCTCC TCCTCTCGAG TATGGTGTGA TTTACTGACT
GATAATGCTT TTCTTGGCAT TGTTGCTGTC GGCATGACTT TCGTTATTTT ATCGGGGGGG
ATCGATTTAT CTGTCGGCTC GGTTATTGCC TTTACTGGTG TGCTGCTGGC TAAGTTAATT
GGTACCTATG GTATTCATCC AGTCTATGCC TTTGCTATCG TCTTAGTTAT GGGCGCAATG
TTTGGTGCGT TGATGGGGTG GATTATTGAT TCCCTGAAAC TTCCAGCGTT TATCATTACT
CTTGCAGGGA TGTTTTTTAT CCGTGGTATG AGTTTTATCG TTTCTGAAGA GTCGCTGCCG
ATTAACCACC CGATATATGA AACGTTGGCT AATTATGCCT GGCGTGTTCC TGGGGGTGGG
CGATTTACCT TGTTAGCATT TATTATGCTG ATGGTTGTAG CTTTTGGCAT CCTTTTGGCT
CATCACACTC GTTTTGGTCA TAACGTTTAT GCGATTGGCG GTAATAGTGT CTCTGCGGGG
TTGATGGGTG TCCCGGTCAG GAGAACGACC ATTAAAATTT ATATGCTATC CAGTACATTG
GCTGCATTAT CAGGCATTGT TTTCTCTCTC TACACGTCTG CGGGTTATGC GTTGGCAGCC
AGTGGTGTTG AGTTAGATGC TATTGCTGCG GTTGTCATTG GTGGCACATT ACTGGCGGGC
GGTATCGGTA CGGTATTCGG TACGTTGTTC GGTGTGTTAA TTCAGGGCCT GATACAGAGT
TATATTACTT TCGACGGCAC ACTCAGCTCG TGGTGGACCA AAATTGTGAT TGGTATTTTG
CTCTTTAGCT TTATCGTGAT TCAGAAAGCG ATGAGCGCTT TTTATCTCAA CCGCAGATCA
CGCCCTCAGT CATCGCCACT TACTCCCGTG TAA
|
|---|
| Protein sequence | MLKRNVPLLI TIAVFILGYA FCLSQFPSFS SSRVWCDLLT DNAFLGIVAV GMTFVILSGG
IDLSVGSVIA FTGVLLAKLI GTYGIHPVYA FAIVLVMGAM FGALMGWIID SLKLPAFIIT
LAGMFFIRGM SFIVSEESLP INHPIYETLA NYAWRVPGGG RFTLLAFIML MVVAFGILLA
HHTRFGHNVY AIGGNSVSAG LMGVPVRRTT IKIYMLSSTL AALSGIVFSL YTSAGYALAA
SGVELDAIAA VVIGGTLLAG GIGTVFGTLF GVLIQGLIQS YITFDGTLSS WWTKIVIGIL
LFSFIVIQKA MSAFYLNRRS RPQSSPLTPV
|
|---|
| |