Gene YpsIP31758_0141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0141 
SymboltrmA 
ID5386657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp155055 
End bp156158 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content48% 
IMG OID640863100 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_001399141 
Protein GI153948502 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.000469849 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCCCA ACATCCTGCC GATTGAAAGC TACGACCACC AACTGGCAGA AAAGTCTGCC 
CGTCTTAAGG CGATGATGTT GCCATTTCAG GCACCCGAGC CAGAAATATT TCGTTCTCCG 
GCAGACCATT ACCGTATGAG AGCCGAATTT CGCGTTTGGC ATGATGAAGA TGACTTGTAC 
CACATCATGT TTGACCAACA GACCAAGCAA CGTATCCGGG TTGAACAATT CCCGGTAGCC 
AGTCGGTTAA TCAATCGCTT AATGGATGCT CTGATGACCG CCATCAGAGC GGAACCGCTA 
TTGCGACGCA AACTGTTCCA AATAGATTAT TTATCTACCC TCAGCGGTAA GCTGATCGCC 
TCGTTGCTGT ATCACCGCCA ATTAGATGAA GAGTGGCAGC AAAAAGCGCT GGAACTGCGA 
GATCAGTTAC GTGCACAAGG TTTTGACCTA CAACTCATTG GTCGAGCAGC TAAAACTAAA 
ATCATGCTGG ATCACGATTA TATCGATGAG GTCTTGCCAG TCGCCGGACG CGAGATGATC 
TATCGGCAGG TTGAAAATAG TTTTACCCAA CCTAATGCGG CGGTGAATAT TCACATGTTG 
GAATGGGCGC TGGATGTTAC CCAAGGTGCC ACTGGCGATT TACTGGAGTT GTATTGTGGT 
AACGGTAATT TCTCATTGGC ACTGGCGCGA AATTTTGAAC GGGTGCTGGC AACAGAAATT 
GCCAAACCTT CCGTCGCAGC GGCTCAATAT AATATTGCAG CAAATAATAT CGATAACGTG 
CAGATTATCC GGATGTCAGC GGAAGAGTTT ACTCAGGCGA TGCAGGGCGT TCGTGAGTTT 
AACCGCCTGA AGGGTATTGA TTTGGGCAGT TATAATTGCG AGACCATCTT TGTCGATCCG 
CCACGCAGTG GGCTGGATCA CGAGACGGTT AAGCTAGTAC AGGCTTACCC GCGTATTCTT 
TATATCTCCT GTAATCCAGA GACGCTGTGC GCCAATTTGG AACAATTACA GCACACACAT 
AAAATTAGCC GACTAGCACT GTTCGATCAA TTCCCTTATA CCCACCATAT GGAATGTGGG 
GTACTGCTGG AAAAACGTCA CTGA
 
Protein sequence
MTPNILPIES YDHQLAEKSA RLKAMMLPFQ APEPEIFRSP ADHYRMRAEF RVWHDEDDLY 
HIMFDQQTKQ RIRVEQFPVA SRLINRLMDA LMTAIRAEPL LRRKLFQIDY LSTLSGKLIA 
SLLYHRQLDE EWQQKALELR DQLRAQGFDL QLIGRAAKTK IMLDHDYIDE VLPVAGREMI 
YRQVENSFTQ PNAAVNIHML EWALDVTQGA TGDLLELYCG NGNFSLALAR NFERVLATEI 
AKPSVAAAQY NIAANNIDNV QIIRMSAEEF TQAMQGVREF NRLKGIDLGS YNCETIFVDP 
PRSGLDHETV KLVQAYPRIL YISCNPETLC ANLEQLQHTH KISRLALFDQ FPYTHHMECG 
VLLEKRH