Gene YpsIP31758_0132 details

Gene Information

• Locus tag: YpsIP31758_0132
• Symbol: hasD
• ID: 5386166
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 144726
• End bp: 146534
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640863091
• Product: type I secretion ATP-binding protein
• Protein accession: YP_001399132
• Protein GI: 153947638
• COG category: [R] General function prediction only
• COG ID: [COG4618] ABC-type protease/lipase transport system, ATPase and permease components
• TIGRFAM ID: [TIGR01842] type I secretion system ABC transporter, PrtD family

Plasmid Coverage information

• Num covering plasmid clones: 59
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATCTT GCAAAACGCC CAGAGCTTCA TCGGTACCGC CGACAATTCT GTCGGTTCTA 
GCGGGTAATA AAAAAATCCT CTGGGGCATC GGGCTATTTA CTGCCGTAAT AAACTTGCTG 
ATGTTGGCAC CAGCCATTTA TATGCTGCAA GTGTATGATC GCGTCCTCGC CTCAGCGAAC 
ACCATGACAT TATTGATGCT CACTGTTCTG GTGCTGGGCG TATTTGTTTT TATTGGTTTA 
TTAGAATGGG TTCGCAGTGC AGTAGTGATT CGCTTGGGGA CTCAGATTGA TATGCAACTC 
AATCAGCCGG TCTTTAACGC GGCCTTTGCC GCCAATCTTA AGGGCCATAA CACGCCAGCC 
GCGCAAGCGC TAAATGACCT GACAGTGTTA CGCCAGTTTG CCACCGGTAA TGCGTTATTT 
GCCTTTTTTG ATGCACCTTG GTTCCCGCTT TATTTGCTGG TAATTTTTTT GCTTCATCCG 
TGGCTGGGGA TGCTGGCCGC CGCAGGCGCA GGTATATTGG TTGTTCTCGC CTGGCTCAAT 
CAGTGGGTCT GTAAAAAACC ATTACACGAT GCCTCAATTA TCACCTCACA CGCGACACAA 
CAAGCCAATG CTAATTTACG TAATGCGGAT GCCATTGAAG CGATGGGGAT GCTCAAAGCA 
TTACGTGAAC GCTGGTTAAT GCAGCACGCG AATTTTCTCT ACCAACAAAA TCTTGCCAGT 
GATAAAAGTA GCCGGGTGAC GGCGGTCGCT AAATCAAGCC GCCAGGCATT GCAATCGATG 
ATGTTAGGTC TGGGAGCGTT ACTGGTGATT TATAATGAAA TCACGGCTGG CGTGATGATT 
GCCGGGTCAA TTTTAATCGG GCGGGTGCTG GGGCCTATCG ATCAACTTAT TGCGGTCTGG 
AAACAATGGA GCCACGCCCG GCTGGCTTAT CAACGTCTCT CCCAATTACT GGCGCAGCAT 
CCATCATCAC CCACCGGCAT GGTTTTGCCT GCCCCACAGG GGAAGCTAAA CGTTACGCAA 
CTTATGGCCT GCAAGCCGGG CACGCACATT CCAGTATTAC ACTCCATCAA CTTTGAACTG 
CAACCCGGTG ATGTGCTAGG TATTTTGGGG CCATCAGGCA GTGGTAAATC CACGCTGGCA 
AAACTCTTGG TCGCCAGCCA GCCCACATTC AGCGGAACAG TGCGTTTAGA TAGCGCAGAC 
CTTTCTCGTT GGGATAAAAC GCAGTTAGGG GAGTTTATCG GTTACTTGCC ACAAAATATT 
CAGCTATTCC GCGGCACTGT TGCTGAAAAT ATTGCACGTT TTGGCACTAT TGATACCGCA 
AAAGTAGTCG CAGCTGCACA GTTGGCAGAT GTACACAATT TAATTCTGCA TTTACCGCAA 
GGGTATGACA CCCCGTTAGG TGACGACGGC GAGGGGTTAT CCGGTGGTCA ACGTCAACGT 
ATCGCCTTAG CTCGGGCAAT GTACGGAATA CCTCGGCTTA TCGTATTGGA TGAACCCAAT 
GCCAGTTTGG ATAAAGAAGG GGAGCAAGCC TTATTAGCCA GTATTATCCA GCTAAAAAAA 
CAAGGCTGCA CCATCGTAAT GATCACCCAT AAACCAGAGC TGTTATCTGG CAGTGACTAT 
TTGCTGTTTT TAAAGAATGG GCAAATGGAT CTATTTGATC GTACTCAGGC GATATTACAG 
AACGTTCAGG GTAAGGATAA GCCTGCCGTG CAACCTGAAG CGAAAATACT GAATAGCCGA 
AGCGGCTGGA GCAACGGTGT GTCATATGGC ATCGGGCCGG CTCGTACTAC ATCATCACCG 
AAGCCATGA 

 

Protein sequence

MESCKTPRAS SVPPTILSVL AGNKKILWGI GLFTAVINLL MLAPAIYMLQ VYDRVLASAN 
TMTLLMLTVL VLGVFVFIGL LEWVRSAVVI RLGTQIDMQL NQPVFNAAFA ANLKGHNTPA 
AQALNDLTVL RQFATGNALF AFFDAPWFPL YLLVIFLLHP WLGMLAAAGA GILVVLAWLN 
QWVCKKPLHD ASIITSHATQ QANANLRNAD AIEAMGMLKA LRERWLMQHA NFLYQQNLAS 
DKSSRVTAVA KSSRQALQSM MLGLGALLVI YNEITAGVMI AGSILIGRVL GPIDQLIAVW 
KQWSHARLAY QRLSQLLAQH PSSPTGMVLP APQGKLNVTQ LMACKPGTHI PVLHSINFEL 
QPGDVLGILG PSGSGKSTLA KLLVASQPTF SGTVRLDSAD LSRWDKTQLG EFIGYLPQNI 
QLFRGTVAEN IARFGTIDTA KVVAAAQLAD VHNLILHLPQ GYDTPLGDDG EGLSGGQRQR 
IALARAMYGI PRLIVLDEPN ASLDKEGEQA LLASIIQLKK QGCTIVMITH KPELLSGSDY 
LLFLKNGQMD LFDRTQAILQ NVQGKDKPAV QPEAKILNSR SGWSNGVSYG IGPARTTSSP 
KP