| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0106 |
|---|
| Symbol | |
|---|
| ID | 5386165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 113340 |
|---|
| End bp | 114632 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640863065 |
|---|
| Product | MFP family transporter |
|---|
| Protein accession | YP_001399106 |
|---|
| Protein GI | 153949160 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA ATCAGATATT CCGCCGGGAC GCGGTAGAGT ATATTAGAAC AAAATGGTTG
GGGAAGGCGC TGTTAACTTC GGGTTATTCC ACAACGTTCA TAGCTGCTTT ATGTGCTATC
TTTTTGGTGT TATTAATTAC TCTTATCATT TATGGAACAT ACACCCGTAG AATAAACGTT
AATGGTGAGG TTATTTCTCA GCCTCACCCC ATAAACATTT TTTCTCCCCA ACAAGGATTC
ATTACCAAAA AATGGGTGGA AGTGGGTGAT ATTGTCCGTA AAGGTCAGCA CTTATATCAA
ATTGATGTCA GTCGAACGAC CTTTTCAGGT AATGTTAGCC TTAACTCTTT AGAAGCAATA
AATAACCAAC TTTCTCAAAT TGATAGCATC ATCAATAATA CACAGAAAAA TAAAGAACTT
ACGCTACTTA ATTTACGTCA GCAGCTCGCA CAATACCAAA AGGCACATAA GAAATCCCAA
GAGCTGGTCG ATAACGCAGG CAAAGGAATG GATGATATGC GGCGTACAAT GGCCAGTTAT
GGTACTTACC AACGTCAGGG TCTAATTACT AAAGATCAAT TAACCAATCA GCGTTCCCTC
TTTTATCAAC AACAGAATGC CTTTCAAAGC CTGAATACTC AACTGATACA AGAAAGCTTA
CAGATAGCAA AACTTGAAAG TGAAATCTCT ACGCGAGCAT CAGATTTTGA TAATGATATC
TCTCAGTATT TATTTCAAAA AGGTGATTTA AAGCGTCAAT TGGCTGAAGT TGATGCGAGT
GGCATGTTAC TCATTAATTC GCCAAGCGAT GGCAAGATTG AAAATATGAG TGTGACCCAA
GGACAGATGG TCAACGTAAA TGACAGTTTG GTCCAATTGA CGCCTTCTGA TAATCCCTAT
TATTGTCTTG TGCTTTGGGT ACCAAACAAT AGCGTCCCTT ATATAAATAC TGGAGACAAA
GTCAATATAC GCTATGACGC TTTCCCCTTT GAAAAGTTTG GTCAATTTCC TGGGCGTATA
ATCTCTATCT CTAATGTCCC CGTTTCACAA CAAGAAATAG CCTCATACAA CATTGCACCG
CGGCTCCCGA ACGGTGGACT CATTGAGCCT TACTATAAAG TCATCGTGGC ACTAGACGAT
ATTCATTTTC GTTATCAGTC TAAACCTTTA ATGCTATCCA ATGGCCTTAA AGCTAATGTC
ACGTTATTCC TTGAAAAAAG GCCTCTTTAT CAATGGATGC TATCTCCATT CTATGACATC
AAGAAAAGTG TAACGGGGCC TGTAAATGAA TGA
|
|---|
| Protein sequence | MSSNQIFRRD AVEYIRTKWL GKALLTSGYS TTFIAALCAI FLVLLITLII YGTYTRRINV
NGEVISQPHP INIFSPQQGF ITKKWVEVGD IVRKGQHLYQ IDVSRTTFSG NVSLNSLEAI
NNQLSQIDSI INNTQKNKEL TLLNLRQQLA QYQKAHKKSQ ELVDNAGKGM DDMRRTMASY
GTYQRQGLIT KDQLTNQRSL FYQQQNAFQS LNTQLIQESL QIAKLESEIS TRASDFDNDI
SQYLFQKGDL KRQLAEVDAS GMLLINSPSD GKIENMSVTQ GQMVNVNDSL VQLTPSDNPY
YCLVLWVPNN SVPYINTGDK VNIRYDAFPF EKFGQFPGRI ISISNVPVSQ QEIASYNIAP
RLPNGGLIEP YYKVIVALDD IHFRYQSKPL MLSNGLKANV TLFLEKRPLY QWMLSPFYDI
KKSVTGPVNE
|
|---|
| |