Gene YpsIP31758_0078 details

Gene Information

• Locus tag: YpsIP31758_0078
• Symbol: secB
• ID: 5387170
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 84284
• End bp: 84760
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640863038
• Product: preprotein translocase subunit SecB
• Protein accession: YP_001399079
• Protein GI: 153948166
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1952] Preprotein translocase subunit SecB
• TIGRFAM ID: [TIGR00809] protein-export chaperone SecB

Plasmid Coverage information

• Num covering plasmid clones: 50
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGAAC AAAACAACAC CGAGATGGCT TTCCAGATCC AACGTATCTA CACCAAAGAT 
ATCTCCTTCG AAGCCCCTAA TGCTCCGCAG GTTTTTCAGC AGGATTGGCA GCCAGAAGTT 
AAACTTGATC TAGATACGGC TTCTAGCCAA CTGGCGGAAG ATGTGTATGA AGTGGTACTG 
CGTGTGACTG TAACGGCCTC TTTGGGTGAA GAAACCGCGT TCCTGTGTGA AGTTCAACAA 
GGTGGCATCT TCTCCGTTGC GGGTATCGAA GGCACTCAAC TGGCGCATTG TTTAGGCGCA 
TATTGTCCGA ATATTCTGTT CCCGTATGCG CGCGAATGTA TCACCAGCCT GGTCTCTCGC 
GGTACTTTCC CACAGCTGAA TTTGGCACCT GTTAACTTTG ATGCTCTGTT CATGAATTAT 
CTGCAACAGC AGGCTGAAGG TGAAGTTGAA GGTGTTGAAC AACGTCAGGA TGCCTGA 

 

Protein sequence

MSEQNNTEMA FQIQRIYTKD ISFEAPNAPQ VFQQDWQPEV KLDLDTASSQ LAEDVYEVVL 
RVTVTASLGE ETAFLCEVQQ GGIFSVAGIE GTQLAHCLGA YCPNILFPYA RECITSLVSR 
GTFPQLNLAP VNFDALFMNY LQQQAEGEVE GVEQRQDA