Gene YpsIP31758_0006 details

Gene Information

• Locus tag: YpsIP31758_0006
• Symbol: trkD
• ID: 5387524
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 5558
• End bp: 7426
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640862963
• Product: potassium transport protein Kup
• Protein accession: YP_001399010
• Protein GI: 153950934
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3158] K+ transporter
• TIGRFAM ID: [TIGR00794] potassium uptake protein

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.0279816
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACAG AGCATAAACA ATCTTTATCC GCGGTGACTT TGGCTGCAAT CGGGGTCGTT 
TACGGTGATA TTGGCACCAG CCCACTCTAT ACCTTGAGAG AGTGTTTTTC TGGTCATTAT 
GGTTTTGATG TCCGACCCGA TGTGGTGTTT GGTTTTTTAT CGCTGATTTT CTGGATGCTA 
ATTCTAGTCG TCTCGGTTAA ATATCTGACC TATGTGATGC GGGCTGATAA CGCGGGTGAA 
GGAGGGATTT TAACGTTGAT GTCTTTGGCA GGGCGTAATA CCTCTTCCAG AGCGACGTCT 
ATCTTGGTGG TCCTTGGGCT AATTGGTGGC AGCTTCTTTT ATGGTGAAGT GGTCATTACC 
CCGGCAATCT CGGTGATGTC AGCTATTGAA GGGTTGGAAA TCGCCGCACC CGCCCTTGAT 
CCCTACATTG TTCCCTGCTC CATTGCCGTA TTAACGCTAC TTTTTGTGAT TCAAAAGCAT 
GGCACTGGCA GTGTTGGTAA ACTTTTCGCC CCGGTGATGC TGGTGTGGTT CCTGACGTTA 
GCCTTACTTG GTCTGCGCAG TATTATTGCT AACCCAGAAG TTTTGGCCGC GCTGAATCCC 
AAATGGGCAA TAAGCTTTTT TGTTGAATAT AAGTCTGTTT CGTTTTTTGC CCTTGGTGCG 
GTAGTTCTGG CGATTACTGG CGTTGAGGCG TTGTATGCGG ATATGGGGCA TTTTGGTAAG 
TTTCCTATCC GGCTCGCTTG GTTTACTGTG GTCTTACCGT CGTTGGTGCT GAATTATTTT 
GGTCAGGGGG CGTTATTACT GAAAAACCCT GAAGCCATCA AAAACCCCTT CTTTCTGCTA 
GCCCCCGACT GGGCACTGAT TCCATTACTT ATTCTGGCGA CGCTAGCCAC TGTTATTGCC 
TCACAGGCGG TGATTTCTGG CGTATTTTCA CTTACTCGAC AGGCTGTTCG TTTAGGGTAT 
TTACCACCCA TGCGAATTAT TCATACTTCA GAGATGGAAT CTGGCCAGAT ATATATCCCG 
GTGATCAATT GGACCCTCTA TTTAGCGGTG GTGTTAGTGA TTATCGGTTT TGAACGCTCC 
AGTAATTTGG CGGCGGCTTA TGGAATAGCG GTTACCGGGA CTATGGTTAT CACCAGTATT 
CTGTTTTGTA CCGTGGCATG GAAAAACTGG CATTGGAATC GCTTTCTCGT CGCATTTTTA 
CTGATGGTAT TGTTGATTAT CGATATCCCG ATGTTTTCTG CCAATGTGCT TAAATTATTC 
TCAGGGGGTT GGTTGCCACT GTCTTTAGGT TTGGTGATGT TTATTATTAT GACCACCTGG 
AAAAGTGAGC GTTTCAGTTT ACTGCGCCGT ATGCATGAAC ACAGTAATTC ACTGGAAGCG 
ATGATTGCTT CACTAGAGAA GTCACCGCCA GTACGGGTAC CCGGTACGGC GGTGTATATG 
TCGCGAGCAA TGAATGTCAT TCCATTTGCA TTATTACATA ACCTTAAACA TAACAAAGTG 
TTACATGAGC GTGTTGTGTT GCTAACGATG CGGACTGACG ATGTGCCTTA TGTACATAAT 
GTGGAGCGGG TTACCATCGA GCAACTTTCT CCAACCTTCT GGCGGGTGGT TGCCAGATAC 
GGTTGGCGTG AAACACCTAA TGTGGCGGAA ATTTTCCACC GTTGTGGTTT GGAAGGTTTG 
TCTTGCCAGA TGATGGAAAC GTCGTTCTTT ATGTCACATG AATCGCTAAT CCTGACTAAG 
CGGCCATGGC ACTTATTTTT ACGTGGTAAG TTATTTATTG CACTTAGCCG TAATGCATTA 
CGCGCACCAG ATCAATTTGA GATCCCACCC AATAGGGTTA TTGAACTTGG GACACAAGTG 
GAAATTTAA 

 

Protein sequence

MSTEHKQSLS AVTLAAIGVV YGDIGTSPLY TLRECFSGHY GFDVRPDVVF GFLSLIFWML 
ILVVSVKYLT YVMRADNAGE GGILTLMSLA GRNTSSRATS ILVVLGLIGG SFFYGEVVIT 
PAISVMSAIE GLEIAAPALD PYIVPCSIAV LTLLFVIQKH GTGSVGKLFA PVMLVWFLTL 
ALLGLRSIIA NPEVLAALNP KWAISFFVEY KSVSFFALGA VVLAITGVEA LYADMGHFGK 
FPIRLAWFTV VLPSLVLNYF GQGALLLKNP EAIKNPFFLL APDWALIPLL ILATLATVIA 
SQAVISGVFS LTRQAVRLGY LPPMRIIHTS EMESGQIYIP VINWTLYLAV VLVIIGFERS 
SNLAAAYGIA VTGTMVITSI LFCTVAWKNW HWNRFLVAFL LMVLLIIDIP MFSANVLKLF 
SGGWLPLSLG LVMFIIMTTW KSERFSLLRR MHEHSNSLEA MIASLEKSPP VRVPGTAVYM 
SRAMNVIPFA LLHNLKHNKV LHERVVLLTM RTDDVPYVHN VERVTIEQLS PTFWRVVARY 
GWRETPNVAE IFHRCGLEGL SCQMMETSFF MSHESLILTK RPWHLFLRGK LFIALSRNAL 
RAPDQFEIPP NRVIELGTQV EI